FMO13014.5prime Sequence
1131 bp (1020 high quality bases) assembled on 2013-01-30
> FMO13014.5prime
CAGTCGACATGGTCCTTGACATGGAATCGGACGATTCTCATGCCAGTTCG
GCGTCCAATTCCTCGGAGTCACGGTCGAATTCGCCCACCAACGACAAGGA
TGAAGTTGTCGCGGATCATGGTGGCGAATCGCCTGGCGGAGGTGGCGACC
CCATACTGGATCGGTCCGATCGAGCCCCCTCCACCAGTAGCTCATCGTCC
AACTCCAGTTCCAGTTCGAATCGCAGTGACCTGTCCAAGAAGCAGAAGAA
GAGCTCGAGCAGCAGCAGCGGAAGTGGCAGTGGCAGTGGCAGTAGCTCTT
CCAGCGGCTCCTCTAGCGAGGATGAGGGCGATCAGGAACCGGAACAGGAG
GTGCAGCGTCTTTCCGAGCAGCAACGGGAGCAGCAGCAGCATTCGCCGAT
AAATGAGCGAGAGTCCGAGTCTGCTGCTGGAACGCCTGTTAATGCGGATC
AACCTGGTTCGCCAAACGCTAAGTCACAGCCTAGCTCGTTCCTCTCATCC
GTTCGCAGTCGAAGCGTCAGTCCCCAGCTGTACAATCAGGCTGCCGTGGA
TCTGAATATCAGTCACGACGACCTTAGCGATGTCAGCGACATCGAGGGTG
AGGAGAAGCGAACCTCATCCAAAAATTCAATGCGTCCGGCGGATGAGAAC
GAGGATGGCGCCATTTCCAATGATTCACTGCCCACTCTCGGCGAAGAGGA
TGAGGTTGAGCAAAAGCAGTCCACGCCTAACGGCAAAGCGTCAAGCGGGG
ATGAGAAGGAGCCTTTCGCAAAAGAAACCCATACCGACGACGCGTCCAAT
GGACTTGCACCAGCGACCGCTTTGCAGGAGGACTTGGTCAAAACTCATGA
CGACGACGCCTTGGACTTCGAGGCGGAAGAGGGCGAGTGTCCGGAGCAGG
CAAAGGAGCCTTCACCGATGGAGAGCACAGCCAACGAAACAACCAGACCA
GAGTACGACCAAGTGTCGCAGACGAGGGCGATGACGACGCGAGGTGGATA
AGACGGCGATGATAAGACGGCGATGACAAGACCACCGCAGATGCCGCTGG
CCATGGCTGTCTGGAGAATGACCAGCAATGACACCGGAAGGACAATCATG
TCATTGCTGCCTGGAGAAGGCCAGAAGAAAG
FMO13014.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 18:34:44
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG1677-RD | 4100 | CG1677-RD | 750..1878 | 8..1121 | 5055 | 97.4 | Plus |
| CG1677-RC | 3461 | CG1677-RC | 108..1236 | 8..1121 | 5055 | 97.4 | Plus |
| CG1677-RB | 4077 | CG1677-RB | 724..1852 | 8..1121 | 5055 | 97.4 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 18:34:41
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 7283941..7284715 | 782..8 | 3875 | 100 | Minus |
| X | 23542271 | X | 7283615..7283868 | 1029..783 | 920 | 97.2 | Minus |
Blast to na_te.dros performed 2014-11-28 18:34:42
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Dmer\R1A3 | 3772 | Dmer\R1A3 MERCR1A3 3772bp | 639..774 | 392..260 | 159 | 60.6 | Minus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6726..6858 | 252..391 | 134 | 58.6 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2566..2644 | 313..391 | 124 | 65 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6759..6866 | 331..439 | 119 | 57.8 | Plus |
FMO13014.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2013-01-30 10:18:24 Download gff for
FMO13014.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG1677-RA | 325..1364 | 8..1039 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:01:50 Download gff for
FMO13014.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG1677-RB | 724..1763 | 8..1039 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:05:50 Download gff for
FMO13014.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG1677-RB | 724..1763 | 8..1039 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 19:05:50 Download gff for
FMO13014.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 7283585..7283868 | 783..1054 | 94 | <- | Minus |
| X | 7283941..7284715 | 8..782 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:01:50 Download gff for
FMO13014.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 7177618..7177901 | 783..1054 | 94 | <- | Minus |
| arm_X | 7177974..7178748 | 8..782 | 100 | | Minus |
