FMO13015.5prime Sequence
1113 bp (1018 high quality bases) assembled on 2013-01-30
> FMO13015.5prime
CAGTCGACATGAAGTTTCCGGATTATGTTCCAAACAACATGTTGGTGGGT
GATCGAACCACATGGGAGTACCACACGGTGGCGGTGACTCGGGTGCCTGG
CTATGGATTCGGCATCGCCGTTTCCGGTGGACGTGATAATCCGCACTTCG
CCAACGGCGATCCCTCGATAGCAGTTAGCGATGTGCTGAAAGGTGGCCCC
GCCGAGGATCGATTGCAAGTCAACGATCGGATAATCTCGGTGAACGGCGT
CTCTCTGGAGAACGTGGAATATGCTACCGCGGTGCAGGTGTTACGCGATA
GTGGCAACACGGTGCAATTGGTGGTCAAGCGTCGCGTGCCCCTCAATCCC
ATTAATGCTGCAGGTGCAGTGCAGCATCAGCATTCACACAGTCTCAGTTC
GGTTGGTCTAATGGCCAATGGAAGTGGAGGAGTGGCGCCAACCCCCATTA
CGAGTCTGAGTCAACCCAACTCGCTGAACTCTTCCCTAGTGCAGAATGCC
AGCAGTGGTCAGCCCATCAAGGTGACCCTCACCAAAGGCGGAAAGAAAGA
TGACTATGGTGTGGTGCTCGGCTGCCGGCTGTTTGTTAAGGAGATCTCCT
CTAAAGCTCGCGAGCAACTAAATGCCAATGGTTATAGCTTGCAAGAGGGT
GACATCATCACCCGCATCCACAATACTAACTGCGGGGATACGATGAGTCT
TAAGGAGGCGAAAAAGATCATTGATGGCTGCAAGGAGCGATTGAACCTAG
TGGTTCTAAGGGACATTACCAACCAAACAGCTGTTAGCCAATTGAATCTG
AACAATTCAGCCAGCCACCAGGCGTCGGGAAATATATACGCCACGCATCA
GCCTCAGTATCCGGATGTAGCAGCAGTAACAACAATCTTGAAGATCCATA
TCTGCCGGGCGGAGCCAGTTACTCCTCGCAGATCTGTACGTGCAACCGCC
AACTCGCACCTCAATGTCCCATATCATGGCAATGGCCTGAACGACGAAAG
AGTATCTTACGCCGCGAGGTCGCCTCCGGTCCAAATGATGGGTATCCTGC
AGCCAACTGATAGACCCGTACCCGACCTCGGCCAGGATGCACCATCGACG
ATCGCGCGGTTCA
FMO13015.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 18:34:51
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| pyd-RM | 6058 | CG43140-RM | 1336..2447 | 9..1101 | 4940 | 97.5 | Plus |
| pyd-RG | 5048 | CG43140-RG | 326..1437 | 9..1101 | 4940 | 97.5 | Plus |
| pyd-RA | 7195 | CG43140-RA | 326..1437 | 9..1101 | 4940 | 97.5 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 18:34:49
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 8839801..8840614 | 1023..218 | 3675 | 98.8 | Minus |
| 3R | 32079331 | 3R | 8842670..8842840 | 217..47 | 840 | 99.4 | Minus |
| 3R | 32079331 | 3R | 8844915..8844954 | 48..9 | 200 | 100 | Minus |
Blast to na_te.dros performed 2014-11-28 18:34:50
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| invader2 | 5124 | invader2 INVADER2 5124bp | 4304..4338 | 62..28 | 112 | 80 | Minus |
FMO13015.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2013-01-30 10:18:25 Download gff for
FMO13015.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| pyd-RC | 317..1420 | 1..1087 | 97 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:01:53 Download gff for
FMO13015.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| pyd-RA | 318..1421 | 1..1087 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:05:55 Download gff for
FMO13015.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| pyd-RA | 318..1421 | 1..1087 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 19:05:55 Download gff for
FMO13015.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 8842670..8842839 | 48..217 | 99 | <- | Minus |
| 3R | 8844916..8844958 | 1..47 | 91 | | Minus |
| 3R | 8839728..8840614 | 218..1087 | 97 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:01:53 Download gff for
FMO13015.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 4665450..4666336 | 218..1087 | 97 | <- | Minus |
| arm_3R | 4668392..4668561 | 48..217 | 99 | <- | Minus |
| arm_3R | 4670638..4670680 | 1..47 | 91 | | Minus |
