FMO13016.5prime Sequence
1120 bp (1013 high quality bases) assembled on 2013-01-30
> FMO13016.5prime
CAGTCGACATGCGAGTCCGAGCCACAGATCCGCGTCCCTGCCCCAAGTGC
GGAAAAATCTACCGCTCCGCCCACACGCTACGCACCCATCTGGAGGACAA
GCACACCGTGTGCCCCGGCTATCGATGTGTGCTCTGCGGCACGGTGGCCA
AGTCCCGCAACTCTTTGCACTCGCATATGTCGCGCCAACATCGCGGCATC
TCCACCAAGGACCTGCCCGTCCTGCCCATGCCCAGTGCTTTCGATCCAGA
GCTCGCCTCGCGCCTTCTGGCCAAGGCGGGCGTCAAGATCTCACCCGCTG
AGCTGAGGGCCAGAGCCTCGCCCACCGGCGGAAGTGGCAGCAGCGGCGGA
GGCGGCGGAGGTGGTAGCAGCCAGGCCAAGTTGGATTTAAGCAACGCTAG
CGGTGGACCCATGGACGATGCCGAGGACTCGGACGACGATCCCGAGGACC
TGACCACGGGCAACGGATTGTATGGAATGGGCGGAAGCAGCAGCGACCTG
AGCCGTTACCACGAGAGCCTGTTGAGCAACTTCGGTCACGCCAGGATGCG
AAATGAGGCGGCTGCCGTGGCGGCCACTGCAGCTGCTCTTGGTCAACCCA
AGGACTTGGGCGTTCAGCTGCCAAACAGCAACGCGCCTGGGCAATCCCTG
CTGGACACCTATCTGCAGTTCATCACGGAGAATACATTCGGCATGCGCAT
GTCCCAGGAGCAGGCCGCTGCAGCAGCACTGCGCGCCAAGATGGCCCAGC
TTACGCGATGGGACACAGTCTGGACAACCTGCCGCCGGGCCTTCTTCCCG
GACAATTCGACCTGAGCAAGCTGGCCGCCGGAAATCCCGCCTTTGGACAG
AGCGGACCCGGACTAACCATTGAGCCGATAATGCGACACGAACAGGCAGC
GGGAAACCTCTCGCCGAACCGACCACTGGCTCTCAACTCGGGCGGCAGAT
GATGGGTCACGATGAAATGCGGAATGATGGCGACATGCGGCGGGAGGTTC
GACCCATGATCTGGGACTGAACAACACCAGTCGGCAGCACATGAGTGGCC
ACTCCGATGCCCGAGGAGAACTACTCGGAGGATGAGGGATTGCCAACACG
CAAGCCTTTCTAGACATCGC
FMO13016.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 18:34:56
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| ab-RF | 4490 | CG43860-RF | 1983..3088 | 9..1099 | 5080 | 98.1 | Plus |
| ab-RD | 4888 | CG43860-RD | 2381..3486 | 9..1099 | 5080 | 98.1 | Plus |
| ab-RA | 5164 | CG43860-RA | 2385..3490 | 9..1099 | 5080 | 98.1 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 18:34:55
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 11258235..11258917 | 9..691 | 3415 | 100 | Plus |
| 2L | 23513712 | 2L | 11258982..11259399 | 690..1093 | 1345 | 94.7 | Plus |
Blast to na_te.dros performed on 2014-11-28 18:34:56 has no hits.
FMO13016.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2013-01-30 10:18:25 Download gff for
FMO13016.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| ab-RA | 2352..3465 | 1..1099 | 97 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:01:56 Download gff for
FMO13016.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| ab-RA | 2377..3490 | 1..1099 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:05:59 Download gff for
FMO13016.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| ab-RA | 2377..3490 | 1..1099 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 19:05:59 Download gff for
FMO13016.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 11258227..11258916 | 1..690 | 99 | -> | Plus |
| 2L | 11258983..11259395 | 691..1089 | 95 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:01:56 Download gff for
FMO13016.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 11258227..11258916 | 1..690 | 99 | -> | Plus |
| arm_2L | 11258983..11259395 | 691..1089 | 95 | -> | Plus |
