FMO13017.5prime Sequence
1066 bp (962 high quality bases) assembled on 2013-01-30
> FMO13017.5prime
CAGTCGACATGCAGTTGCTCCTTAAATCGATATTCACCTGCGCACTATTC
GTGATCTTTGTGTATGCCACCGCCCAGTCGCTGCTCAAAGTCCAGGAGAC
AGAAGCGCGGCAGGCGTACCTTAATGTTACCTCCTCCAGCAGTAGTAATC
TCAGCCAGGACGATGGCCACTTCCTCAGCCGGCGACTAAGGCAAGTCAGC
CATGGCGAGGAGGGCGACGAGGGCGCGCCGTCCCAAATGGACGACGAGTT
GGAACAGATGACCAAGGTGCATGGAGAAGCACCGGACGCGGAGGAGCTGC
GCGAATGTAGCGAGGGTCTTGTCCTGCCACTCTGGATGCCGCAACGCAAC
ATTTCGGTGGGTGACCGCCTCGTCCGCGGCTTTGTTTACTTCGTCCTACT
GATCTACCTGTTTGTGGGTGTGTCCATCATTGCGGATCGCTTCATGGCCG
CCATCGAGGCAATCACATCGATTGAACGGGCGGTGGTGGTCAAGGGACCC
AACAACACCAAGCAGGTGATGCACGTGCGCATCTGGAACGAAACGGTGGC
GAATCTAACGCTAATGGCCCTGGGATCGAGTGCCCCCGAGATCCTGCTCT
CGGTTATTGAGATTTATGCGAAGGACTTCGAGAGCGGTGACTTGGGACCT
GGCACCATCGTGGGATCAGCTGCCTACAACCTGTTTATGATTATCGCCGT
ATGCATGATCTGGATACCGGCGGGCGAGGTACGAAGGATCCGGCATCTGC
GAGTCTTCTTCGTTACCGCCCTCTTCTCGGTCTTCGCCTATGTGTGGCTG
TGGCTCATCCTATCCGTGTTCACGCCCGGCGTGATCCTGGTCTGGGAGGC
GATCGTGACCTTGCTATTCTTCCCGCTGACCGTGCTGTGGGCCTACATCG
CGAGCGGCGTCTTCTGGTCTACAATACATGGACAAGACTACCGGGTCAAT
AGCGCGGCACGTGTGTCGCTAGCACGACAGTTGAGAATGAATGCGGAAAT
GCCTACACATGTCACATCGCCTCGCTACGAGCCCAGCTCCGACGAGCCGT
CGAGATATTCACTGTG
FMO13017.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 18:35:04
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Calx-RI | 7361 | CG5685-RI | 561..1517 | 8..960 | 4625 | 99.2 | Plus |
| Calx-RH | 5947 | CG5685-RH | 561..1517 | 8..960 | 4625 | 99.2 | Plus |
| Calx-RG | 6705 | CG5685-RG | 1265..2221 | 8..960 | 4625 | 99.2 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 18:35:01
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 20992567..20993513 | 8..951 | 4525 | 99.3 | Plus |
Blast to na_te.dros performed on 2014-11-28 18:35:03 has no hits.
FMO13017.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2013-01-30 10:18:26 Download gff for
FMO13017.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Calx-RA | 1168..2137 | 1..969 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:02:00 Download gff for
FMO13017.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Calx-RE | 371..1340 | 1..969 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:06:03 Download gff for
FMO13017.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Calx-RG | 1261..2230 | 1..969 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 19:06:03 Download gff for
FMO13017.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 20992563..20993532 | 1..969 | 98 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:02:00 Download gff for
FMO13017.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 16818285..16819254 | 1..969 | 98 | | Plus |
