FMO13019.5prime Sequence
1128 bp (1040 high quality bases) assembled on 2013-01-30
> FMO13019.5prime
CAGTCGACATGAGCAGGACCTCCAGCCGCTCGCTCTTCCTGCCGCTCTGC
CTGCTCGTCCTGTCCGCGCTAAATGGCCCAGCGGCGGCGGCATCTCGCGT
CCGCGTCAGCTCCTCGACCACCATGACCAGGAACATCGAGGAGGAGAATG
CCCTACTTTTACTTTTAGCTGGACCTCCCGTGCTATCTGAGTCCATAATG
GGTACGGTCGGCCGGCTGCCCTGCAACGTCACCCCGCCCATTTACGAGGA
TCGAGTGGCGCTGGTTATCTGGTACAAAGTTGGCCTGAAGACTCCCATTT
ACAGTGTGGACACACGCGACTCGAACTTCGCCCAGGGAACGCACTGGTCG
GATGAGACCTACCGGGAGCGGCTCTCCTTCCACGTGGAAGGACGTGCTGG
CACGCTGACCATCAAGTCAACCACGGAGGACGACACGGGCGAGTATCGCT
GCCGCGTCGACTTCCAGAAGAGTCCGACTCGCAACTCCAAAGTGAATTTA
ACTGTCATAATTCCGCCCGAGTCGGTGATTATATTGGACAGCAAGGGTGT
GACCATCGAGGATCACACGCTGGGTCCTTACAACGAGGGCTCTGGGATAA
ACATCACGTGCGTGGCCATCGGCGGCCGCCCGCAGCCGAGGGTTACCTGG
CTGCATGGAAACACCGTCTACAAGAATGCCAGTGTGGGCCAACCCCTGTC
CGAGCGACGGGTGGGCAATACCCTGTCCTTGGCTCGACTGGAGCGCACGA
ATCTTCACATGCAGCTAACGTGCCGGGCGGAGAACAATAATTTGACAACG
CCAATTATCAGCAGCGTCGTCCTCGACATGAACCTGCGTCCTTTGATTGT
GAAGCTGCACGGGGAGATCGAGCTCTGTCGGCGGGGAATTCTTATCAGCT
CAGTTGCGTTGTCATCGGAGCACGTCCAGCGCCGACGATTACCTGGTGGA
GGCAGTACCCCCATGAGATAACTCCCGAGATTGCTACACCGGACGGTAAT
CTGACTACCTCGGTGCTGACATTCACGCCCACATCGATGACGCGGCAAGT
TCTCCTCGTGTCCGGCGGAGCAAGCATGAACCCGAATTCGGAAGGAGGAC
GGCCTGTATGACATAATCCCATACCGGG
FMO13019.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 18:35:15
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG12484-RB | 5113 | CG12484-RB | 550..1654 | 8..1103 | 5145 | 98.2 | Plus |
| CG12484-RA | 3109 | CG12484-RA | 550..1654 | 8..1103 | 5145 | 98.2 | Plus |
| CG12484-RE | 4936 | CG12484-RE | 550..1633 | 8..1103 | 4820 | 96.3 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 18:35:13
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 20462001..20462209 | 302..510 | 1045 | 100 | Plus |
| 2R | 25286936 | 2R | 20464618..20464828 | 624..834 | 1040 | 99.5 | Plus |
| 2R | 25286936 | 2R | 20429634..20429776 | 8..150 | 715 | 100 | Plus |
| 2R | 25286936 | 2R | 20459479..20459620 | 163..304 | 680 | 98.6 | Plus |
| 2R | 25286936 | 2R | 20463860..20463974 | 511..625 | 575 | 100 | Plus |
| 2R | 25286936 | 2R | 20464926..20465060 | 835..966 | 545 | 97 | Plus |
| 2R | 25286936 | 2R | 20465647..20465738 | 983..1072 | 300 | 93.5 | Plus |
Blast to na_te.dros performed on 2014-11-28 18:35:14 has no hits.
FMO13019.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2013-01-30 10:18:27 Download gff for
FMO13019.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG12484-RA | 547..1638 | 1..1085 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:02:09 Download gff for
FMO13019.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG12484-RA | 544..1635 | 1..1085 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:06:12 Download gff for
FMO13019.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG12484-RA | 544..1635 | 1..1085 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 19:06:12 Download gff for
FMO13019.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 20459488..20459620 | 172..304 | 100 | -> | Plus |
| 2R | 20462004..20462209 | 305..510 | 100 | -> | Plus |
| 2R | 20463860..20463973 | 511..624 | 100 | -> | Plus |
| 2R | 20464619..20464828 | 625..834 | 99 | -> | Plus |
| 2R | 20464926..20465077 | 835..982 | 94 | -> | Plus |
| 2R | 20465647..20465753 | 983..1085 | 92 | | Plus |
| 2R | 20429628..20429776 | 1..150 | 97 | -> | Plus |
| 2R | 20431843..20431863 | 151..171 | 100 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:02:09 Download gff for
FMO13019.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 16351365..16351478 | 511..624 | 100 | -> | Plus |
| arm_2R | 16317133..16317281 | 1..150 | 97 | -> | Plus |
| arm_2R | 16319348..16319368 | 151..171 | 100 | -> | Plus |
| arm_2R | 16346993..16347125 | 172..304 | 100 | -> | Plus |
| arm_2R | 16349509..16349714 | 305..510 | 100 | -> | Plus |
| arm_2R | 16352124..16352333 | 625..834 | 99 | -> | Plus |
| arm_2R | 16352431..16352582 | 835..982 | 94 | -> | Plus |
| arm_2R | 16353152..16353258 | 983..1085 | 92 | | Plus |
