FMO13022.5prime Sequence
968 bp (968 high quality bases) assembled on 2013-01-30
> FMO13022.5prime
CAGTCGACATGGCACAGGAGACGAAGACCGTGGCGACAGCCAAAGACCAG
AACCAACGAGACCATATCGACGAGGAAGAAGTCATCGAACTCCACGAGTC
ACGCAGCTTTTACGATCGGGTTCGCGAACAGGCGGAGCGATTTGCTAGCA
CACGAGTTGGCCAATTCGTGATCGAACGGGCTGATAAAGCGCTGGCCATG
ATCGAGGATACTGCCAAGTGGAGTCTTCCGCAAGACAAGTCTTCTGCTCC
CTTGGAACGCCCCCTGCCTTGGGCTCCATTCCTGATGCTCATCGTCCTGC
TGCGGCTCACACGCATTTGGTTATCGGTTGGCGCCCTGATGATCGGCAAT
GGTCCAATATCTCCTACGGATATGGTATACTTTATACAGACTAGACGCCG
CAAGCTGCGGGCCATTCGGGTTCATGGCCTAAAGGTGATGAGACGGCGCC
AGCAGGAGGTGTCCTATGGCAGTGGCAAGGGTATGACCCAGAAGCTCAAT
CAGTGGTTTTCCCGAGCCATGTGCCGTCCAGGAGTTCAGCAGGATAGCAG
CAGTCGCCGGGTGTTTGTCCGCCATTCGGAGCAGGGTTTAAGCAATTTCG
TAGTTAAGCGCCCTCGAGAGGAGGACTGCAATGCCGATGCCGACCTGACC
ATCGACCAAATGCTGGCCAAGTATGCCAACGAGAATTCCGAAGATGACTC
CGACTTTGTGCCCAATGAGGAGGAGGAGGAGGAGGAAAGCAGCAGCAGCA
GCGGGGAAAGCGAATCCGAATCCGGCTCCAGCGAAAGAATAAGCAGCGGC
GAGGTGGATGAGTTGTCAGCCAGCCCAAGCAGAGTCAGCTGGAGCGGTGG
TGAAACGGAGTGCACCAAGGCCGAGGAGAGAAATGATAAGGAAACTGACA
TACGACACCAGCATGGCAACACGACAAGAGCAGCGATGTGGTAATGGACA
TGCAGCTTTCTAGACCAT
FMO13022.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 18:34:16
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Jabba-RB | 1323 | CG42351-RB | 229..1188 | 9..951 | 4345 | 97.9 | Plus |
| Jabba-RG | 1663 | CG42351-RG | 229..1167 | 9..933 | 4315 | 98.2 | Plus |
| Jabba-RH | 1667 | CG42351-RH | 229..1167 | 9..933 | 4315 | 98.2 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 18:34:14
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 18758943..18759295 | 585..233 | 1765 | 100 | Minus |
| 2R | 25286936 | 2R | 18758641..18758883 | 823..582 | 1150 | 99.2 | Minus |
| 2R | 25286936 | 2R | 18759387..18759612 | 234..9 | 1130 | 100 | Minus |
Blast to na_te.dros performed 2014-11-28 18:34:15
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 17.6 | 7439 | 17.6 DMIS176 7439bp AKA(J01060,J01061) Derived from X01472 (g8142) (Rel. 36, Last updated, Version 2). | 6049..6079 | 935..965 | 119 | 87.1 | Plus |
| 297 | 6995 | 297 DMIS297 6995bp Derived from X03431 (g8146) (Rel. 36, Last updated, Version 2). | 5703..5733 | 935..965 | 110 | 83.9 | Plus |
FMO13022.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2013-01-30 10:18:21 Download gff for
FMO13022.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG42351-RB | 212..1116 | 1..898 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:01:34 Download gff for
FMO13022.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Jabba-RB | 222..1126 | 1..898 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:05:33 Download gff for
FMO13022.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Jabba-RB | 222..1126 | 1..898 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 19:05:33 Download gff for
FMO13022.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 18758641..18758880 | 585..823 | 99 | <- | Minus |
| 2R | 18758944..18759293 | 235..584 | 100 | <- | Minus |
| 2R | 18759387..18759619 | 1..234 | 98 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:01:34 Download gff for
FMO13022.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 14646892..14647124 | 1..234 | 98 | | Minus |
| arm_2R | 14646146..14646385 | 585..823 | 99 | <- | Minus |
| arm_2R | 14646449..14646798 | 235..584 | 100 | <- | Minus |
