FMO13024.5prime Sequence
527 bp (527 high quality bases) assembled on 2013-01-30
> FMO13024.5prime
CAGTCGACATGGTTACTCCCACCATCAAGCTTGAGTCCTCGGAAGGGGTG
ATCTTTCCGACGGAAGTCCGAGTCGCCATGGTCTCCGAAACCATCAAGAC
CATGTTGGATCACTTTGCCGTGCAGAACGACGAGAATGCCATCGTGCCCC
TGCACTCGGTGAGCACGTTCACCCTGGGCAAGATTCTAGCCTGGGCCAAT
CACCACAAGGACGATGATGATCAGTCAACGGAGGGTGAGGAGCTGAAGCC
ACGTCGCCCATATGCCATCTCCCCATGGGACGCCATCTTCTTGATGGTCA
ATTCAACCACCTTGCTCGAAATCATACTGGCCGCCAAACAACTGCAGATC
AAGGGCCTACTGGAACTCACCTACAATGTGGTGGCCAATATGATTAGGGG
CAAGACTCCCGAGGAGATCCGCTTCATCTTCAACATTCCGGAAGACGTCT
CGCCATCCGTGGACGGGGAGTTGAGATGGAAAGACCTGTTTTTGTGGCCC
ATGGATTTCGCAAGCTTTCTAGACCAT
FMO13024.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 18:34:29
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| SkpE-RA | 713 | CG11942-RA | 82..582 | 9..509 | 2505 | 100 | Plus |
| SkpC-RA | 629 | CG11941-RA | 67..500 | 9..442 | 970 | 81.8 | Plus |
| SkpD-RA | 656 | CG12700-RA | 73..486 | 9..422 | 915 | 81.7 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 18:34:27
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 19823499..19823999 | 509..9 | 2505 | 100 | Minus |
| X | 23542271 | X | 19816138..19816571 | 9..442 | 970 | 81.6 | Plus |
| X | 23542271 | X | 19812801..19813214 | 9..422 | 915 | 81.4 | Plus |
Blast to na_te.dros performed on 2014-11-28 18:34:28 has no hits.
FMO13024.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2013-01-30 10:18:23 Download gff for
FMO13024.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| skpE-RA | 1..504 | 9..512 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:01:41 Download gff for
FMO13024.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| skpE-RA | 1..504 | 9..512 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:05:41 Download gff for
FMO13024.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| SkpE-RA | 82..587 | 9..515 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 19:05:41 Download gff for
FMO13024.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 19823494..19823999 | 9..515 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:01:41 Download gff for
FMO13024.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 19717527..19718032 | 9..515 | 99 | | Minus |
