Clone FMO13025 Report

Search the DGRC for FMO13025

Clone and Library Details

Library:FMO
Tissue Source:D. melanogaster
Created by:Charles Yu
Date Registered:2006-03-07
Comments:BD Creator expression clones with C-terminus FLAG HA tag for tissue culture
Original Plate Number:130
Well:25
Vector:pMK33-CFH-BD
Associated Gene/TranscriptCG13578-RA
Protein status:
Sequenced Size:Not sequenced

Clone Sequence Records

FMO13025.5prime Sequence

461 bp (461 high quality bases) assembled on 2013-01-30

> FMO13025.5prime
CAGTCGACATGCGTAGCATGGGCTGCTCCAGTTCCAAGACCTCCGCCACC
GTAGAAGACACCAAATCATCGAAGCCCTGCTCCTGCTCAGCCAAGTCCAG
TACAACGAGAATGGCCGCCAAGAAGGAGTACCCTGCCTCGGAGGCCTTCA
CCATTCCTTTGGAGAGCGATGACGGTCCGGAGATGCCGCTAAACGAGACG
GTTCGCCAGCCACCGAAGAGGATTCAGCAACTGATGCAGGAGGCGGCCAG
CTCGGAGCCACTCACCTTGGAGGAGCTGGAGGAGAAGCAGCTAAAGGCCG
AGCAGAGGCGCCAGGAGCTCATGCAGCAGAAACTGGAGATCATACAAAAG
AATGCCCAGATGCTCATGAAGCCTCATGAGGAAACCGTTGGCGAAGGCGA
AGGAGACCGGAACGAAGGCAAGGAGGAACTACCCGAAAAGGTCGCAAGCT
TTCTAGACCAT

FMO13025.5prime Blast Records

Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 18:35:46
Subject Length Description Subject Range Query Range Score Percent Strand
CG13578-RA 855 CG13578-RA 297..731 9..443 2175 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 18:35:45
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 24378306..24378616 133..443 1555 100 Plus
2R 25286936 2R 24378127..24378250 9..132 620 100 Plus
Blast to na_te.dros performed 2014-11-28 18:35:46
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\TART 8444 Dyak\TART TARTYAK 8444bp 7258..7370 218..329 120 59.6 Plus
TART-C 11124 TART-C TARTC 11124bp 8711..8823 218..329 120 59.6 Plus

FMO13025.5prime Sim4 Records

Sim4 to dmel-all-transcript-r5.32.fasta performed 2013-01-30 10:18:32 Download gff for FMO13025.5prime
Subject Subject Range Query Range Percent Splice Strand
CG13578-RA 291..741 1..455 98   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:02:31 Download gff for FMO13025.5prime
Subject Subject Range Query Range Percent Splice Strand
CG13578-RA 291..741 1..455 98   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:06:32 Download gff for FMO13025.5prime
Subject Subject Range Query Range Percent Splice Strand
CG13578-RA 291..741 1..455 98   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 19:06:32 Download gff for FMO13025.5prime
Subject Subject Range Query Range Percent Splice Strand
2R 24378121..24378250 1..132 96 -> Plus
2R 24378306..24378626 133..455 98   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:02:31 Download gff for FMO13025.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_2R 20265644..20265773 1..132 96 -> Plus
arm_2R 20265829..20266149 133..455 98   Plus