Clone FMO13027 Report

Search the DGRC for FMO13027

Clone and Library Details

Library:FMO
Tissue Source:D. melanogaster
Created by:Charles Yu
Date Registered:2006-03-07
Comments:BD Creator expression clones with C-terminus FLAG HA tag for tissue culture
Original Plate Number:130
Well:27
Vector:pMK33-CFH-BD
Associated Gene/TranscriptCG15172-RA
Protein status:
Sequenced Size:Not sequenced

Clone Sequence Records

FMO13027.5prime Sequence

371 bp (371 high quality bases) assembled on 2013-01-30

> FMO13027.5prime
CAGTCGACATGTGTTTTAATGTACTGGGAGTGAGCAATCTGCTACCCGAT
TGCAGCATTGCAAACCGGGTCCATCTGTTCTCTTTGCTGCAGCAACTCCA
GAACCAGGAGCGTCGTCCGGAGGAAGTGAGTGACGAGTTGCGGGATCGCT
ACAACGTATTTCGCCAGGTTTTGCCCAACTACCCGCCACCGGAACAGCCA
GACGACGATATGCTAGCAAACTTTGATGAGTTATTCCAGGAGCAGCTTTC
AATATCGATCTTCACAGACACTGAATCATCCGGCGAGGAGACCTGCGAAT
CCAGTCTGGATAGTGACTCCGAGCAGATCAGCATCGGGATGGATCGTCAT
CATGCAAGCTTTCTAGACCAT

FMO13027.5prime Blast Records

Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 18:35:55
Subject Length Description Subject Range Query Range Score Percent Strand
CG15172-RD 629 CG15172-RD 161..506 8..353 1730 100 Plus
CG15172-RC 574 CG15172-RC 108..453 8..353 1730 100 Plus
CG15172-RB 631 CG15172-RB 165..510 8..353 1730 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 18:35:53
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 19023178..19023523 8..353 1730 100 Plus
2L 23513712 2L 19075260..19075375 185..70 460 93.1 Minus
2L 23513712 2L 19075157..19075250 311..218 365 92.6 Minus
Blast to na_te.dros performed on 2014-11-28 18:35:54 has no hits.

FMO13027.5prime Sim4 Records

Sim4 to dmel-all-transcript-r5.32.fasta performed 2013-01-30 10:18:33 Download gff for FMO13027.5prime
Subject Subject Range Query Range Percent Splice Strand
CG15172-RA 12..360 1..353 98   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:02:36 Download gff for FMO13027.5prime
Subject Subject Range Query Range Percent Splice Strand
CG15172-RB 162..510 1..353 98   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:06:36 Download gff for FMO13027.5prime
Subject Subject Range Query Range Percent Splice Strand
CG15172-RB 162..510 1..353 98   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 19:06:36 Download gff for FMO13027.5prime
Subject Subject Range Query Range Percent Splice Strand
2L 19023175..19023523 1..353 98   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:02:36 Download gff for FMO13027.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_2L 19023175..19023523 1..353 98   Plus