FMO13028.5prime Sequence
518 bp (518 high quality bases) assembled on 2013-01-30
> FMO13028.5prime
CAGTCGACATGAAGGTTCTGTTCGTGTGCATTGGCAACACATGCCGGTCA
CCAATGGCCGAGGCCATACTGAAGCATTTGGTAGTGAAACGGAATCTGCA
GGACTGGTATGTGGACAGTGCTGGCCTCAGGAGTTGGAACGTTGGCCTGG
AGCCCCAGGCACGTGGACAACAATTGTTAAAACAGCATGGTTTGAAAACA
AACCACTTGGGTCGTATGATAAGCGCTCAAGACTTCTATGACTTCGATTA
CATATTCGCCATGGACAATAGCAACCTATTGGAGCTTGAGCATATGGCTG
CTTCTCTTACTCCCAGTCCGACATGCAAGATTCAATTGCTGGGTAGCTAT
ATTGGACGCAAGGAGGATGAGATCATCGAGGATCCATACTTTATTCAAGG
CATGGGAGGCTTTAATGCTGCATATCTGCAGATTCTGGAAAGCTGCGAAC
GATTTCTGCAACATTATAAATCGGATGACAAGGAGTTATCATTAGGAAGT
GCAAGCTTTCTAGACCAT
FMO13028.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 18:36:01
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG31469-RA | 613 | CG31469-RA | 6..497 | 9..500 | 2460 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 18:35:59
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 13709668..13709857 | 222..33 | 935 | 99.5 | Minus |
| 3R | 32079331 | 3R | 13709441..13709615 | 392..218 | 875 | 100 | Minus |
| 3R | 32079331 | 3R | 13709275..13709382 | 500..393 | 540 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 18:36:00 has no hits.
FMO13028.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2013-01-30 10:18:34 Download gff for
FMO13028.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG31469-RA | 1..500 | 5..504 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:02:40 Download gff for
FMO13028.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG31469-RA | 1..500 | 5..504 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:06:39 Download gff for
FMO13028.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG31469-RA | 1..500 | 5..504 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 19:06:39 Download gff for
FMO13028.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 13709272..13709382 | 393..504 | 98 | <- | Minus |
| 3R | 13709441..13709614 | 219..392 | 100 | <- | Minus |
| 3R | 13709672..13709856 | 34..218 | 100 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:02:40 Download gff for
FMO13028.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 9534994..9535104 | 393..504 | 98 | <- | Minus |
| arm_3R | 9535163..9535336 | 219..392 | 100 | <- | Minus |
| arm_3R | 9535394..9535578 | 34..218 | 100 | <- | Minus |
