FMO13034.5prime Sequence
1096 bp (967 high quality bases) assembled on 2013-01-30
> FMO13034.5prime
CAGTCGACATGGCAACCGCTTGCAATCGACTGACATGGTCGCTGGTAGTG
GTGGTGGCGGTGATGGCGGTCATGTGCTCATCCGCGGAGGCTGCCGACAA
GGAGGGCTTTCCCGTGGCCATAATCCACATAAATGATTTGCACGCCAGGT
TCGAGGCCACGGACACCTCCGGTGGCACCTGCGACGAGGGCGAGGAGTGC
ATCGGTGGCTATCCGCGCACCGTTTACACCGTGAAGCGTCTGCTTCAGGA
GCAAGCGGAGCTCAATCCCATCTACATCAATGCCGGCGACAGTTTTCAGG
GCACGTTGTGGTACAACATCGGTCGATGGAACGTTACGCAGCAGCTGCTG
AACCTTCTGCCCGCCGATGTGATGACCCTCGGCAATCACGAGTTCGATCA
CGGTGTGGAGGGCGTGGTGCCATTCCTAGAGACGGTGGACACCAATATGC
TGGTGGCCAACATGGACTGCGCCCACGAGCCCACCATGGAGGGCAAGTAC
AACAAGTCGATGATAATCGAGCGATCGGGCCGCAAGATTGGTGTGATTGG
TGTTATCCTGGAGACAACCTACGATCTGGCCAATACCGGTAAGGTGATCT
TTCGCAACGAGAGCGACACCATTCGCGAGGAGGCGCAGCTGCTGAAGGCC
CAGGGTGCCAACATCATCATTGTCGTCTCCCACTGCGGCTACGATGTGGA
TCAGCAGATCGCTGCGAATGCCGGCGATTGGATCGACGTCATCGTTGGCT
CCCATTCGCACACCTTCCTCTACACGGGTGATCCGCCTGGGCCACACACG
CCATCCGGTGATTATCCCACCGAGGTTATCCACAGCTCTGGGCCACCGCG
TGCTATTGTCCAGGCATCGGCCTATGCCCGCTACGTGGGCAACTGATCGT
CTATTTCGATGACACGGCGATGTGCTGGACTACGAGGGTGATCCGCTCCT
ACATGGACCATTCGGGCATAGAATGATATCGTTCTACAATCATGGTGCTC
TGTCACTCACGATGAAACCAATGCGAGCGGAAGGAGGCCAATCTCGTGAT
CTCACAAATTCATAGGACGAGGAGAAAGCTCCGGGTATCTCTCCCC
FMO13034.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 18:35:30
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG42249-RD | 1827 | CG42249-RD | 81..1110 | 9..1031 | 4705 | 97.8 | Plus |
| CG42249-RC | 1818 | CG42249-RC | 72..1101 | 9..1031 | 4705 | 97.8 | Plus |
| CG42249-RB | 1820 | CG42249-RB | 72..1024 | 9..960 | 4650 | 99.5 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 18:35:28
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 11104375..11104763 | 573..960 | 1705 | 98.7 | Plus |
| X | 23542271 | X | 11103826..11104054 | 146..374 | 1145 | 100 | Plus |
| X | 23542271 | X | 11104112..11104311 | 374..573 | 1000 | 100 | Plus |
| X | 23542271 | X | 11103476..11103617 | 9..150 | 710 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 18:35:28 has no hits.
FMO13034.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2013-01-30 10:18:30 Download gff for
FMO13034.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG42249-RC | 65..1067 | 1..1001 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:02:21 Download gff for
FMO13034.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG42249-RC | 65..1067 | 1..1001 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:06:22 Download gff for
FMO13034.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG42249-RC | 65..1067 | 1..1001 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 19:06:22 Download gff for
FMO13034.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 11103829..11104054 | 149..374 | 100 | -> | Plus |
| X | 11104113..11104310 | 375..572 | 100 | -> | Plus |
| X | 11104375..11104773 | 573..971 | 97 | -> | Plus |
| X | 11103469..11103615 | 1..148 | 97 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:02:21 Download gff for
FMO13034.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 10997502..10997648 | 1..148 | 97 | -> | Plus |
| arm_X | 10997862..10998087 | 149..374 | 100 | -> | Plus |
| arm_X | 10998146..10998343 | 375..572 | 100 | -> | Plus |
| arm_X | 10998408..10998806 | 573..971 | 97 | -> | Plus |
