Clone FMO13038 Report

Search the DGRC for FMO13038

Clone and Library Details

Library:FMO
Tissue Source:D. melanogaster
Created by:Charles Yu
Date Registered:2006-03-07
Comments:BD Creator expression clones with C-terminus FLAG HA tag for tissue culture
Original Plate Number:130
Well:38
Vector:pMK33-CFH-BD
Associated Gene/TranscriptCG11043-RA
Protein status:
Sequenced Size:Not sequenced

Clone Sequence Records

FMO13038.5prime Sequence

488 bp (488 high quality bases) assembled on 2013-01-30

> FMO13038.5prime
CAGTCGACATGTCGTCCTACATTTCGCGTCTACTTAAGGCTCAGTCCGCC
TCCAAACGTCTGATCTCCAATTTAACCCAGCGCGACGGAAAGCTAAGCTC
TTTGCTTCGACGACTAGGTTTACAGTGGCAAGGATCAGCCGCTGCTCCTC
AACAGCGTCCCATATCCACAACTCAGGTGCAAAAGTCAGCGCTAATTGCG
GACGATCAACTGGTCACCGGGATTCAGAAGCGCGAAATGCTGCTGGCCAA
GCAGGGCTGCGAGGACCCTTGGGGTTTCAGCAAGGTGATCAGGCGCGGAT
CGGGAAGGGAGAACGACCCCACCGTCGTGCCATCGGCGTTCGATGCACGC
CTCGTAGGCTGTCTGTGCCTGGATGACCGCTTGCCCAAGTGGATGTGGAT
TGAGAAGGACGAGGGACCGAAGCGGTGCGAGTGCGGTTTTTACTTCATCC
TCAAGAATGTCCCACCCGTTGCAAGCTTTCTAGACCAT

FMO13038.5prime Blast Records

Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 18:37:04
Subject Length Description Subject Range Query Range Score Percent Strand
CG11043-RA 647 CG11043-RA 101..562 9..470 2250 99.1 Plus
CG9596-RC 2175 CG9596-RC 1553..1835 470..188 1355 98.6 Minus
CG9596-RC 2175 CG9596-RC 1890..2070 189..9 905 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 18:37:02
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 6559766..6560048 188..470 1355 98.6 Plus
2L 23513712 2L 6559531..6559711 9..189 905 100 Plus
Blast to na_te.dros performed on 2014-11-28 18:37:03 has no hits.

FMO13038.5prime Sim4 Records

Sim4 to dmel-all-transcript-r5.32.fasta performed 2013-01-30 10:18:41 Download gff for FMO13038.5prime
Subject Subject Range Query Range Percent Splice Strand
CG11043-RA 101..562 9..470 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:03:22 Download gff for FMO13038.5prime
Subject Subject Range Query Range Percent Splice Strand
CG11043-RA 101..562 9..470 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:07:12 Download gff for FMO13038.5prime
Subject Subject Range Query Range Percent Splice Strand
CG11043-RA 101..562 9..470 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 19:07:12 Download gff for FMO13038.5prime
Subject Subject Range Query Range Percent Splice Strand
2L 6559768..6560048 190..470 98   Plus
2L 6559531..6559711 9..189 100 -> Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:03:22 Download gff for FMO13038.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_2L 6559531..6559711 9..189 100 -> Plus
arm_2L 6559768..6560048 190..470 98   Plus