FMO13042.5prime Sequence
1130 bp (1017 high quality bases) assembled on 2013-01-30
> FMO13042.5prime
CAGTCGACATGATCACTGCTCGTCTCCTGCTCTCGCTGATGATGCCAGTG
CTGCTGGACGCAGCTGCTCCGCCACGACGGCCGAATGTGGTGATGGTGAT
CTTTGATGATCTGCGTCCAGTTATTGGAGCTTATGGCGATACGCTGGCCA
GCACGCCGTATTTGGATAACTTTGCTAGAGGAAGTCACATCTTTACAAGA
GTTTACAGCCAGCAATCCCTGTGTGCACCCAGCCGGAATTCGCTGCTCAC
GGGTCGAAGACCGGATACTCTGCATCTGTACGATTTCTACAGTTACTGGC
GCACTTTCACCGGAAATTTCACCACTTTGCCGCAGTACTTCAAGGAGCAC
GGATATTACACCTATAGCTGTGGAAAGGTCTTCCATCCTGGCCTCTCATC
CAACAACACGGATGACTATCCCCTTAGTTGGTCGGCTCCAGCATTTCGTC
CCCGAACCGAGCAGTTTATGAACTCGCCAGTGTGTCCCGATAAGGAGGGC
ATTCTGCGGAAGAATCTCATCTGTCCAGTGGAGCTACAAACTCAGCCGTA
CAAAACGCTGCCGGACATCGAGTCCGTGGCGGAGGCATTGCGCTTTGTGG
GCTCACGGAGCAGGCACAGCCAGGAACCATTTTTTCTGGCCATGGGCTTC
CACAAGCCGCACATTAATTTCCGGTTCCCACGGCAATTCCTTTCGAGATT
CAACCTTTCCCAGTTTTACAATTACACGGAGGATAGCCTGAAGCCGCCGG
ATATGCCGGCAGTGGCCTGAATCCTTACACAGATGTGCGGGCCAGGGATG
ACTTCAAGCACTCCAACATATCCTTTCCCTACGGACCGATATCCCCACTC
CAGGCTGCTCAGATACGACAGAGCTACTACGCCTCGGTGTCCTATGTGGA
TGATCTGTTTGGCAAGTTGATTGGGGGATTGATCTGGATGAGACGGTGTT
GTCGCTCTGGGGGATCATGCTGTCTCTGGGTGAGCACGCCGAGTGGGCCA
AGTACAGCACTTCGAGTGCGCTCAAGGTTCCACTGAATCATAGAGTCCAA
GTTCCCTGCGCCCAACGAGTACTATCCGGAATACAGAATTCTTGAAGTTT
CCCACTTGGGGAACTGGAGATTACCAAATG
FMO13042.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 18:37:22
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG12014-RA | 1636 | CG12014-RA | 15..1134 | 6..1107 | 5040 | 97.8 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 18:37:20
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 3378549..3379382 | 211..1036 | 3765 | 98.4 | Plus |
| 3L | 28110227 | 3L | 3378282..3378488 | 6..212 | 1035 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 18:37:21 has no hits.
FMO13042.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2013-01-30 10:18:43 Download gff for
FMO13042.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG12014-RA | 10..1105 | 1..1082 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:03:35 Download gff for
FMO13042.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG12014-RA | 10..1105 | 1..1082 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:07:20 Download gff for
FMO13042.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG12014-RA | 10..1105 | 1..1082 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 19:07:20 Download gff for
FMO13042.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 3378277..3378488 | 1..212 | 99 | -> | Plus |
| 3L | 3378551..3379434 | 213..1082 | 97 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:03:35 Download gff for
FMO13042.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 3378277..3378488 | 1..212 | 99 | -> | Plus |
| arm_3L | 3378551..3379434 | 213..1082 | 97 | | Plus |
