FMO13043.5prime Sequence
882 bp (881 high quality bases) assembled on 2013-01-30
> FMO13043.5prime
CAGTCGACATGAAAGACGCAAAGCCCTTTCCCGTGCTCAAGAATGATAAC
CTGCTGCGCGCCGCACGTGGCGAGGTGGTGGACCGGGTGCCTGTTTGGGT
GATGCGCCAAGCGGGGCGCTACCTGCCGGAGTTCCAGGAGCTGCGAAAGC
ACCACGACTTCTTCACCGTCTGCCGCACCCCGGAGCTAGCGTGCGAAGTG
ACCATGCAGCCATTGCGCCGCTTCGACCTGGACGCCTCCATAATTTTTTC
GGACATCCTTGTCATTCCCCAAGCACTCGGCCTCACCGTGGAGATGCACG
CGGGCGTTGGTCCCGTTCTGCCACAGCCCATCGTGGTGCCGGAGGACCTC
AAGCGCCTGACGCCGGACGGAGCCTTGTCCCGCCTCAGCTACGTGGGCGA
CGCAATCACCATGATGCGGCACAAGCTCGAAGGTCGAGTGCTGCTAATCG
GCTTTACAGGAGCGCCGTGGACACTAATGGGATATATGATCGAGGGCGGT
GGGAGCAAGACCATGTCGAAAGCTAAAGCTTGGCTCAACGAACATCCTGA
GGACTCTAAGCTGTTCCTGAACCTGCTGACCGACGCAATTGTGGACTACC
TGGAGATGCAGGTGAAAGCTGGCGCTCAAATGCTGCAGGTATTCGAATCG
TCCGCCGAGCATCTCTCCAAGGAGCAGTTCCTGCAGTGGTGTGTACCCTA
CCTGAAGAGAATACGCGACGAGCTGGTGGACCGTCTCACAAAGAACGCCA
TCCCCGTGGTTCCCATGACGCTGTTCGCTAAGGGTGCTGGGCACTCGCTG
AAGGAGCAGAGCGAACTGGGCTACGACGTTATTGGCCTTGATTGGACTGT
GGATCCGCTGGAGGCACGCATTTGGTCGGACC
FMO13043.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 18:37:29
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Updo-RA | 1299 | CG1818-RA | 145..1019 | 9..882 | 4260 | 99.2 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 18:37:27
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 9584926..9585671 | 22..767 | 3670 | 99.5 | Plus |
| 2R | 25286936 | 2R | 9585730..9585846 | 767..882 | 505 | 97.4 | Plus |
Blast to na_te.dros performed on 2014-11-28 18:37:27 has no hits.
FMO13043.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2013-01-30 10:18:43 Download gff for
FMO13043.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Updo-RA | 113..995 | 1..882 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:03:40 Download gff for
FMO13043.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Updo-RA | 137..1019 | 1..882 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:07:23 Download gff for
FMO13043.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Updo-RA | 137..1019 | 1..882 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 19:07:23 Download gff for
FMO13043.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 9585731..9585846 | 768..882 | 97 | | Plus |
| 2R | 9584928..9585671 | 24..767 | 99 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:03:40 Download gff for
FMO13043.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 5472433..5473176 | 24..767 | 99 | -> | Plus |
| arm_2R | 5473236..5473351 | 768..882 | 97 | | Plus |
