FMO13055.5prime Sequence
1077 bp (990 high quality bases) assembled on 2013-01-30
> FMO13055.5prime
CAGTCGACATGGAGATATCCCAGCCCAGCATCGGCATCTTCTACATCAGC
AAAGTGCTGGCCCTGGCTCCATATGCTACGGTCCGGAACTCCAAGGGCCG
GGTGGAAATTGGTCGCAGCTGGCTCTTCACTGTATACTCGGCCACATTAA
CGGTGGTTATGGTTTTTCTCACTTATCGGGGTCTCCTGTTCGATGCTAAC
TCCGAAATTCCCGTGCGAATGAAGTCGGCTACGTCGAAGGTGGTGACGGC
CCTGGACGTGTCTGTGGTGGTCATGGCCATTGTATCCGGTGTTTACTGTG
GCCTTTTCAGCCTGAACGACACTCTCGAGCTCAACGATCGACTAAACAAG
ATCGATAATACCCTAAATGCCTACAATAACTTTCGAAGAGATCGATGGCG
AGCCTTGGGCATGGCTGCCGTCTCTCTGCTGGCCATTTCGATTCTGGTCG
GCCTGGATGTAGGGACGTGGATGCGCATTGCCCAGGATATGAACATAGCT
CAGTCGGATACGGAGCTCAATGTGCACTGGTACATTCCATTCTATAGTCT
TTACTTCATCCTCACGGGCTTGCAGGTTAACATTGCCAACACGGCCTATG
GACTAGGAAGGCGCTTTGGCCGTCTGACCGAATGCTTTCGAGCAGCTTTC
TTGCAGAGAACAATGCAACCAGTGCCATCAAGCCACAAAAGGTCAGCACC
GTGAAGAACGTTAGCGTAAATCGGCCAGCGATGCCATCGGCACTCCACGC
GAGCCTGACGAAGCTGACGGCGAAACCTTGCCCAGTGAAGCCGCAGCCAA
GAACAAGGGTTGCTCCTCAATCCCTGGCGGACAGTCACGAGTCGCTGGGA
AATGTGTCCACCTCCTGTCCAACTCCTTCGGCATTGCGGTTCTCTTCATC
CTGGTGTCCTGTCTGCTGCACTTCGTGACTACGGCCTACTTCCTCTTTTC
TGGAACTGCTCAGCAAGCGGATAACGGCTACCTGTGGGTGCAGATGCCTC
TGGATTGCTTCCATTCCTGGCGACTGCTATGGGTGGTTGAACCGTGGCAC
TTGGCTGGCCGAAAAGTCCCAATATAA
FMO13055.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 18:38:39
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Gr43a-RA | 1449 | CG1712-RA | 13..1071 | 9..1062 | 4885 | 98.1 | Plus |
| Gr43a-RB | 1515 | CG1712-RB | 13..802 | 9..796 | 3900 | 99.7 | Plus |
| Gr43a-RC | 1527 | CG1712-RC | 13..814 | 9..796 | 3770 | 98.3 | Plus |
| Gr43a-RB | 1515 | CG1712-RB | 866..1137 | 794..1062 | 1000 | 93.5 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 18:38:37
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 7392142..7392306 | 513..349 | 825 | 100 | Minus |
| 2R | 25286936 | 2R | 7392996..7393149 | 162..9 | 770 | 100 | Minus |
| 2R | 25286936 | 2R | 7391896..7392040 | 656..513 | 675 | 99.3 | Minus |
| 2R | 25286936 | 2R | 7392372..7392505 | 350..217 | 670 | 100 | Minus |
| 2R | 25286936 | 2R | 7391700..7391843 | 796..654 | 670 | 99.3 | Minus |
| 2R | 25286936 | 2R | 7391309..7391498 | 1062..873 | 555 | 88.5 | Minus |
| 2R | 25286936 | 2R | 7392878..7392933 | 217..162 | 280 | 100 | Minus |
| 2R | 25286936 | 2R | 7391555..7391636 | 872..794 | 260 | 96.3 | Minus |
Blast to na_te.dros performed 2014-11-28 18:38:38
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Dm88 | 4558 | Dm88 DM88 4558bp | 2777..2871 | 912..823 | 147 | 66.3 | Minus |
FMO13055.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2013-01-30 10:18:51 Download gff for
FMO13055.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Gr43a-RA | 13..1055 | 9..1046 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:04:22 Download gff for
FMO13055.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Gr43a-RA | 13..1055 | 9..1046 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:08:03 Download gff for
FMO13055.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Gr43a-RA | 13..1055 | 9..1046 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 19:08:03 Download gff for
FMO13055.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 7391700..7391840 | 657..796 | 99 | <- | Minus |
| 2R | 7391896..7392039 | 514..656 | 99 | <- | Minus |
| 2R | 7392142..7392304 | 351..513 | 100 | <- | Minus |
| 2R | 7392372..7392504 | 218..350 | 100 | <- | Minus |
| 2R | 7392878..7392932 | 163..217 | 100 | <- | Minus |
| 2R | 7392996..7393149 | 9..162 | 100 | | Minus |
| 2R | 7391328..7391498 | 873..1043 | 92 | <- | Minus |
| 2R | 7391555..7391633 | 797..872 | 96 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:04:22 Download gff for
FMO13055.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 3278833..3279003 | 873..1043 | 92 | <- | Minus |
| arm_2R | 3279060..3279138 | 797..872 | 96 | <- | Minus |
| arm_2R | 3279205..3279345 | 657..796 | 99 | <- | Minus |
| arm_2R | 3279401..3279544 | 514..656 | 99 | <- | Minus |
| arm_2R | 3279647..3279809 | 351..513 | 100 | <- | Minus |
| arm_2R | 3279877..3280009 | 218..350 | 100 | <- | Minus |
| arm_2R | 3280383..3280437 | 163..217 | 100 | <- | Minus |
| arm_2R | 3280501..3280654 | 9..162 | 100 | | Minus |
