FMO13056.5prime Sequence
1109 bp (1012 high quality bases) assembled on 2013-01-30
> FMO13056.5prime
CAGTCGACATGCGCTATAATCTGTTAGCCAGTTCGTTAAAATTGCTGAAT
AGCACGAAAACCCACAATTTGTTCTTGGTGAACGTGCGCAGCTTGACCGG
CGCCGCCCACACCAACGATGCAGTGGCTCCGACCACGCGCCCACCGCCCG
CAGAATCGAGGAATCCCGGAGAGGAGCAACGATCACTGCACATCGCGGTA
ATTGGAGTGCCCAATGTGGGAAAGAGCACGTTCATCAACAACACGGTGAA
CCACCGAGTGTGTCCCACCTCGGCCAAGGTGCACACCACTCGGCAGTCGA
ACACGGCCATTTACACCACCGGCCAGACGCAGTTGGTCTTTTACGATACG
CCGGGCCTGGTCACGCAACATGAGATTCGTCGGCACCACCTGGACCAGAA
CTTTAAGAGTGCCTACCGCCATGCCATACAGCATGCGGACATCATCGCCG
TGGTGCACGATGCCTCAAATGCCTGGACTAGGAAGGAACTGCATCCCACT
GTCTTGGATACGCTGAAGGCGTATAGCAACCTGCCCAGTTTCCTGGTGCT
GAATAAGATAGACGCCCTGAAGTCGAAGCGTTTGCTGTTGGATCTGATCA
AGACACTCACCAACGACACCTTGACAGTTGGCAAGCGGGAAGTCCAGGCA
AAAAGTGCTCTCGCCAAGGAAATAAGAATCAACAAGCGGGAGTCTAGCTG
GAGCCATTTTAGCGACGTGTTTCTTGTTTCCGCCTTGACCGGCAATGGGC
TGCAGGAGATGCAGAACTACCTGGTGGGCCAGGCTAAGCCCAGGGATTGG
AAATACCCAGCTGACATTCATACGGACTCCAGCCCAGAAGCATTAATTGT
GGAGAGTGTGCGGGCTCGTCTGCTGGACTACTTGCCGCAGAGATACCCTA
CAACCTTAAGTGCGAGATCGAGTACTACAGTGTGAAAAAAATGTTGTCTA
CACATCCGTGCAGTTCAGTGCCCCACCACGCGAATCGAGCGCCTATCTGT
GGCGAGGGTAATGCAGCTGGCGCAGACACGGAGCGAGTACATCGACCTGT
GTGAAATGTCGGCAAGCAATGTTCCTACTATATTCTACAGTTTCAAGCAT
AGAAACGCG
FMO13056.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 18:38:44
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG7488-RA | 1249 | CG7488-RA | 72..1168 | 9..1094 | 5045 | 98.2 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 18:38:43
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 12995691..12996624 | 9..941 | 4605 | 99.8 | Plus |
| 3R | 32079331 | 3R | 12996682..12996756 | 941..1013 | 275 | 97.3 | Plus |
Blast to na_te.dros performed on 2014-11-28 18:38:43 has no hits.
FMO13056.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2013-01-30 10:18:52 Download gff for
FMO13056.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG7488-RA | 38..1104 | 1..1059 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:04:26 Download gff for
FMO13056.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG7488-RA | 65..1131 | 1..1059 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:08:06 Download gff for
FMO13056.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG7488-RA | 65..1131 | 1..1059 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 19:08:06 Download gff for
FMO13056.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 12995684..12996624 | 1..940 | 99 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:04:26 Download gff for
FMO13056.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 8821406..8822346 | 1..940 | 99 | -> | Plus |
