FMO13057.5prime Sequence
1082 bp (987 high quality bases) assembled on 2013-01-30
> FMO13057.5prime
CAGTCGACATGCTGTCCAGCGAGATAGCCACTCTCGAGTGTGTGCATCAT
CCGAATATACTGAGGCTTTTCGAGGTGGTCGAAACTCTGGGCCGCGTTTA
CCTGGTCACTGAGTGGATTCGCGGTGGCGAGCTATACAACCACATCACCC
AAGGCGGTCCGCTGCGGGAGATTCATGCGGCCCCGTTGCTGAAACAACTC
CTCCTGGCAGTCAAACATATGCACAGTCTGGGCTACGTGCATCGGGACAT
AAAGGCGGAAAATGTCCTGCTCCTCTCCGAGGATCGCCTCAAGCTGGCCG
ACTTCGGTTTCAGTACCCAACTCATCAATGGTGCCAATCAAAAGCTCGAC
ACGTTCTGCGGATCCCCTCCGTATGCGGCGCCCGAGCTCTTCTCCGATGA
CCACTACATAGGGGCGCCCGTGGATGTTTGGGCCCTGGGCATCCTGCTCT
ACTTCATGGTGGTCGGAAACATGCCCTTCCGGGCACCAACGATTCCCGGC
CTGAAAGCAGCCATCCTGAAGGGTGACTATCTGCTGCCCGGCCAGCTCAG
CTTGCCCTGCATAAGACTTATACAACGCATCTTGATTCATATACCCGCCC
AGCGGCCAACCATCGACGACATGCTGAACAGCCAGTTCGTGACCTGTCCC
AAGCTCAGTGCCGATCTGATGCAGTGGGAGATCAACCAGCACACCAAGCC
GGTCAAGAGGTCCATCTTCTGGGTGCGCAGCAAGTCGCATCGGCTGCGGA
AGTCCGCCTCACTACGGGATCGATACGCGGAGGTGGTCAAGAAGCCGGCC
ATTAGCATGAACACCAGGCAGCAGGACGAGATGTTTGTGCAGAACTTCCT
GCAACCGATCGAGATGGGACACGAACTGTTGGTCCCGGTGTCAAGTCAGC
TGACGAGCACAGTCCACCGAGCAGCGAAGCGTCAACAAAGTACATGTCTG
CGCAGCCTGAGAGACGTCACGCCCATGAAACGAACCGGAAGCAGCTGGCA
CGTGGACAGTCATCGTCGCAGATCATCTTGAATGTGGAGGTGGCGAGAAT
GCCCCTGTCAGAATACGACCGGAACGGCCTTG
FMO13057.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 18:38:51
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG4629-RF | 2910 | CG4629-RF | 757..1779 | 9..1012 | 4635 | 97.8 | Plus |
| CG4629-RE | 3115 | CG4629-RE | 805..1827 | 9..1012 | 4635 | 97.8 | Plus |
| Atg4a-RB | 4075 | CG4428-RB | 3074..3531 | 1012..574 | 1810 | 95.2 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 18:38:49
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 1084484..1084836 | 924..574 | 1655 | 98.6 | Minus |
| 2L | 23513712 | 2L | 1084894..1085137 | 573..330 | 1220 | 100 | Minus |
| 2L | 23513712 | 2L | 1085524..1085682 | 221..63 | 795 | 100 | Minus |
| 2L | 23513712 | 2L | 1085199..1085310 | 332..221 | 560 | 100 | Minus |
| 2L | 23513712 | 2L | 1085743..1085799 | 65..9 | 285 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 18:38:50 has no hits.
FMO13057.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2013-01-30 10:18:52 Download gff for
FMO13057.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG4629-RB | 875..1909 | 1..1015 | 97 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:04:31 Download gff for
FMO13057.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG4629-RE | 797..1831 | 1..1015 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:08:10 Download gff for
FMO13057.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG4629-RE | 797..1831 | 1..1015 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 19:08:10 Download gff for
FMO13057.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 1084375..1084836 | 574..1015 | 95 | <- | Minus |
| 2L | 1084894..1085136 | 331..573 | 100 | <- | Minus |
| 2L | 1085201..1085309 | 222..330 | 100 | <- | Minus |
| 2L | 1085524..1085680 | 65..221 | 100 | <- | Minus |
| 2L | 1085744..1085805 | 1..64 | 95 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:04:31 Download gff for
FMO13057.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 1084375..1084836 | 574..1015 | 95 | <- | Minus |
| arm_2L | 1084894..1085136 | 331..573 | 100 | <- | Minus |
| arm_2L | 1085201..1085309 | 222..330 | 100 | <- | Minus |
| arm_2L | 1085524..1085680 | 65..221 | 100 | <- | Minus |
| arm_2L | 1085744..1085805 | 1..64 | 95 | | Minus |
