FMO13061.5prime Sequence
983 bp (983 high quality bases) assembled on 2013-01-30
> FMO13061.5prime
CAGTCGACATGTTGACCGAATTCGCTGGCAATCTATCGCATCCGCTGGAG
TTTGGTCATGTTCTGGAGGTCGTGGCCAAGACCATCGATGGAGCAGCCAG
GTTCCACATTAACCTCTGCACGGCCAAGAGCACGGTCGATCCGAACGCAG
ATATTGGGCTACGCTTCTCATGCTATTTTCGGAACGATGTGATCGTTCGA
AATTCCCGGATAAACGGCGCCTGGGGCGAGGAGGAGTCCCATGTCATGGA
CCCCAACACCCTGCCCAATCCCATCGTCAGTGGCGAGTTCTTTTTGGTCT
ACATTCTTTGTTGCGAGGACAGCTTTGCCATCTCGATAAATAGCCGAGAG
TTCTGCAGATTCCGCTACCGCATGCCGTTGGGAACGATTCGTGCTCTGGA
GATCCGTGATCAGATCCAAGTCATTAAACAGGTGGATCATCGTACTGTGT
TTCCAAATCCGTGGCCAGCCGTTCACGCCTCGGACTACTTTAAGGCGTTC
AGTAACGATCAGCCAATTTTGTTTAGTCCGGGCCATGTGATTGTCCTTAC
AGCTCGGTGTTTCGAGAATAAAAAGGGACAGTTCATAATCAAGTTCATGG
ACTCGGATACCAAGCGCGAGGAGCTACACTTCAGTGTGCGTTTCGATGAG
AAGGCAGTAGTGCGCAATTCCATGAACAAAAATTTTGAATTCGGAAGCGA
GGAGCGCCATGGAGGTTTCCCCTTCGTCTTTAACCAGCAATTCAAGCTGG
CGCTTGCGTTTACGGAACGCGAGGTTTTGACTGCCGTGGACGGTTATAAC
TTCTTTAGCTACACCTGGCGCACACCCAATGCCATGATGAATCTAGTGGG
TTTCAAGGTGACAAGCATAAATGGCCTGTAGTGCAGATAACTGGTGTGAT
CACCTGCAGACGGGGATCCTACGTGCGCTGGCTCCAAAAATATTCCCGCC
ATGATTACGAATGTGTGCAGCTTTCTAGACCAT
FMO13061.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 18:39:16
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG5335-RA | 1273 | CG5335-RA | 251..1210 | 8..963 | 4595 | 98.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 18:39:15
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 18621999..18622588 | 99..688 | 2935 | 99.8 | Plus |
| 2R | 25286936 | 2R | 18622645..18622923 | 689..963 | 1105 | 96.4 | Plus |
| 2R | 25286936 | 2R | 18621791..18621885 | 8..102 | 475 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 18:39:15 has no hits.
FMO13061.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2013-01-30 10:18:55 Download gff for
FMO13061.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG5335-RA | 247..1213 | 8..970 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:04:47 Download gff for
FMO13061.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG5335-RA | 251..1217 | 8..970 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:08:23 Download gff for
FMO13061.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG5335-RA | 251..1217 | 8..970 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 19:08:23 Download gff for
FMO13061.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 18621791..18621883 | 8..100 | 100 | -> | Plus |
| 2R | 18622001..18622588 | 101..688 | 99 | -> | Plus |
| 2R | 18622645..18622930 | 689..970 | 95 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:04:47 Download gff for
FMO13061.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 14510150..14510435 | 689..970 | 95 | | Plus |
| arm_2R | 14509296..14509388 | 8..100 | 100 | -> | Plus |
| arm_2R | 14509506..14510093 | 101..688 | 99 | -> | Plus |
