FMO13062.5prime Sequence
1044 bp (977 high quality bases) assembled on 2013-01-30
> FMO13062.5prime
CAGTCGACATGAGTTTCCATAAGAGCGACTCGCGGACGCCGCTGGCGCCC
ACCGAGTACACTAAAATCCCGACGGTCACTGCGGGCTACGGAGAAAACGA
GAAGCCCAAAGGCGGCAAAGGCGGGCAATCCAAGTTCATACGTTCGGACA
TGGCCGACGTCCCCGTGCAGCAGGCGGCAGGATCGACGCTTCCGTTGGTA
ATCTCTCGGAAAAAAGGTGACGACTCCGAGGATGGCAACTACAATCCGTT
CGAGCACCGCAAGGTGGAGCATCCGACATCGGATCTCGAGACATTTGTAC
ACTTGCTAAAGGGATCGCTTGGCTCCGGAATATTGGCCATGCCAATGGCC
TTCTCCCACGCTGGATTGTGGTTCGGTTTGGTGGCCACCTTCGCGGTGGG
CACCTTGTGCACCTACTGCGTTCACATCCTGGTCAAATGTTCCCACATCC
TATGCCGACGTCGCAAAATCCCGATGATGGGATTCGCCGATGTGGCGGAA
CAGGCTTTCCTCGACGGACCACCTGCCCTGAATCGCTGGTCACGCTTCAT
CCGGTTCATGGTCAATACGTTTCTGGTTATCGATTTGCTGGGCTGCTGCT
GCATCTATCTGGTTTTCGTGGCCACCAATGTGGAGCAGGTCGTGCGGGTG
TATATGGAAACGGAGCTGAGCATTAGAGTTTGGATCATGATCGTGACGGC
ACCGCTGATCTTTATGTGCCTGGTACGCAACCTGAAGTTCCTCACGCCCT
TCTCGATGATAGCCAACATCCTGATGTTCGTGGGCATCGTGATCACCTTC
ATCTATATGTTCTCCGATATTCCTGCCCCCGTGGAACGTCCTGGAATTGT
GAGTGTAACGAATGGCCATTGTTCTTCGGCACCCGTGATCTTTGCTCTGG
AGGGCATCGGTGTAGTTAAGTCCCTGGAGACGACATGAAGAACCCCAGCC
ACTTCTCGGGTTGCCCATCTGTCCTGAAACTTGGCTGGGGCTGGTGATTT
GCCCTCTCTACCCCGGGTGGGATTCTTGGCTTCCTGGAGAAATG
FMO13062.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 18:22:28
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG43693-RB | 2399 | CG43693-RB | 268..1296 | 9..1036 | 4625 | 97.2 | Plus |
| CG43693-RA | 2541 | CG43693-RA | 410..1438 | 9..1036 | 4625 | 97.2 | Plus |
| CG43693-RE | 2227 | CG43693-RE | 147..1124 | 60..1036 | 4370 | 97 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 18:22:27
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 11037736..11038434 | 978..281 | 3155 | 97.7 | Minus |
| 3L | 28110227 | 3L | 11039617..11039764 | 281..134 | 710 | 98.6 | Minus |
| 3L | 28110227 | 3L | 11039996..11040068 | 135..63 | 365 | 100 | Minus |
| 3L | 28110227 | 3L | 11046178..11046231 | 62..9 | 270 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 18:22:27 has no hits.
FMO13062.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2013-01-30 10:18:56 Download gff for
FMO13062.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG6327-RA | 401..1409 | 1..1011 | 97 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 21:53:06 Download gff for
FMO13062.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG43693-RA | 403..1411 | 1..1011 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:14:56 Download gff for
FMO13062.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG43693-RA | 403..1411 | 1..1011 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 19:14:56 Download gff for
FMO13062.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 11037703..11038434 | 281..1011 | 97 | <- | Minus |
| 3L | 11039618..11039764 | 134..280 | 98 | <- | Minus |
| 3L | 11039998..11040068 | 63..133 | 100 | <- | Minus |
| 3L | 11046178..11046238 | 1..62 | 95 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 21:53:06 Download gff for
FMO13062.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 11030803..11031534 | 281..1011 | 97 | <- | Minus |
| arm_3L | 11032718..11032864 | 134..280 | 98 | <- | Minus |
| arm_3L | 11033098..11033168 | 63..133 | 100 | <- | Minus |
| arm_3L | 11039278..11039338 | 1..62 | 95 | | Minus |
