FMO13063.5prime Sequence
1074 bp (1042 high quality bases) assembled on 2013-01-30
> FMO13063.5prime
CAGTCGACATGGCAAATCGCGCAAATCGTCATGCTGCTCGCACCGAGGAT
TCGGATAATACCATTAACTACGTCCAATGCGACGGACTGGCCGTCATGAA
GATGGTGAAGCACTGCCATGAGGAGTCGAGCAACATGGACCTCGCCCAGG
GCGCCCTGCTCGGTCTGGTGGTAGACAAGTGCCTGGAGATCACCAACTGC
TTCCCGTTTCCCAAGAGCGGCGATGAGACCATGGACGAGGAGATGTACCA
GCTGACCGTGATGCGTCGCCTGCGTCGCGTCAACGTAGATCATCTCCATG
TGGGCTGGTACCAGAGCTCCGACGTGGGCAACAGCCTGTCAATGGCTCTG
TTGGAATCGCAGTACCACTACCAGACCAGCATTGAAGAGTCCGTCGTTGT
CGTCTACGATACGCAGAAGTCATCCCGCGGATTCCTGTGCTTGAAGGCCT
ACCGCCTTACTCCGCAGGCCATTCAGATGTACAAGGATGGCGACTTCACT
CCAGAGGCATTCCGCACCCTGAAGGTCGGCTACGAGAACCTCTTCGCCGA
GATTCCCATTGTGATCAAGAACTCGCCGCTGACCAACATTATGATGAGCG
AGCTGAACGAGCTGCTGCCCGAGGACAAGGGGCACAACTTCCTGGACCTG
GGCACCGCCACCGTATTGGAGAACCAAATGCGTAGCCTGATCGAGCGCGT
CGACGAGTTGTACCAGGAGGCAGTGCGCTATAACAAGTACCAGCAGGTGG
TCTTCAAGCAGGATACGGAGAAGCACCGTGCTCTGGCTAAGCTGGCCGCC
GAGAACGCCGTTCGCACATCGAAGGGAGAGCCCACGGTGCCAGAGGAGGA
AGTGATCAAACAGTTCCGCCCCATGACTGCGCCCAACCGCCTGACGGCCA
CCATAACTCTGGCAGATCAATACCACGCCCAGCATATCGCACAATTCTGT
TCGCAATCGCTGGCAAACTCTCATCACGGAATCGCTGCAAATTGCCAAGG
AGGCAAAGGAAACAAGCAAGCTTTCTAAAACCATTCGGTTTGGCGCGCCG
GGCCCAGGAAGTGGTCCAATCTTA
FMO13063.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 18:22:36
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| eIF-3p40-RB | 1182 | CG9124-RB | 40..1055 | 3..1013 | 4925 | 99.3 | Plus |
| eIF-3p40-RA | 1496 | CG9124-RA | 354..1369 | 3..1013 | 4925 | 99.3 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 18:22:34
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 5051636..5052315 | 768..89 | 3400 | 100 | Minus |
| 2L | 23513712 | 2L | 5051320..5051571 | 1013..767 | 995 | 97.6 | Minus |
| 2L | 23513712 | 2L | 5052654..5052741 | 90..3 | 425 | 98.9 | Minus |
Blast to na_te.dros performed 2014-11-28 18:22:35
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Dyak\TART | 8444 | Dyak\TART TARTYAK 8444bp | 8315..8386 | 640..709 | 121 | 67.1 | Plus |
FMO13063.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2013-01-30 10:18:56 Download gff for
FMO13063.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| eIF-3p40-RA | 468..1487 | 1..1019 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 21:53:11 Download gff for
FMO13063.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| eIF-3p40-RA | 353..1372 | 1..1019 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:15:00 Download gff for
FMO13063.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| eIF-3p40-RA | 353..1372 | 1..1019 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 19:15:00 Download gff for
FMO13063.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 5051303..5051570 | 768..1029 | 94 | <- | Minus |
| 2L | 5051637..5052314 | 90..767 | 100 | <- | Minus |
| 2L | 5052655..5052742 | 1..89 | 97 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 21:53:11 Download gff for
FMO13063.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 5051303..5051570 | 768..1029 | 94 | <- | Minus |
| arm_2L | 5051637..5052314 | 90..767 | 100 | <- | Minus |
| arm_2L | 5052655..5052742 | 1..89 | 97 | | Minus |
