FMO13066.5prime Sequence
467 bp (467 high quality bases) assembled on 2013-01-30
> FMO13066.5prime
CAGTCGACATGGCCAGCACCGAGAGTCTGGATGGCAGTGCCTTCGAGGGG
GACATCTCATCCATTCCGCAAGTGGGCCATCTGACCACAGAGCCCCAGGA
GTTGGAGTGTCCAGCCTGCCAGCAGTTGCAGACTACCCACGTGAAATCGG
AGGCAGTGACCGTTCTGCAGAAGATTGCCTGCTCGCTGAATGTGCTTCTC
TGCTGTAACCCCATTCGCTGGAAGGGCCGTCATGATGTCAATCACTACTG
CAGCTCCTGTGGCTGTTTCATTGGACGCGACATCACTCTGAGTTGGTACA
AGAGGACCCTCTTTCGGCTGCAACGGGGAGAGGTGGAGGATAACGGACGC
TGGCAGAGATTCCGCAAGGTGGAGAAGGAGCAGCTGGACGAGAAAAAACT
TGGCAGACAGCGCAAGGCCATCGAATCGAAGCGTTCCAATGAGAATTATG
CAAGCTTTCTAGACCAT
FMO13066.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 18:22:51
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG30196-RA | 496 | CG30196-RA | 18..463 | 4..449 | 2155 | 98.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 18:22:49
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 22654838..22655082 | 449..205 | 1180 | 98.8 | Minus |
| 2R | 25286936 | 2R | 22655174..22655375 | 205..4 | 980 | 99 | Minus |
Blast to na_te.dros performed on 2014-11-28 18:22:50 has no hits.
FMO13066.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2013-01-30 10:18:58 Download gff for
FMO13066.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG30196-RA | 15..465 | 1..453 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 21:53:20 Download gff for
FMO13066.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG30196-RA | 16..466 | 1..453 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:15:10 Download gff for
FMO13066.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG30196-RA | 16..466 | 1..453 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 19:15:10 Download gff for
FMO13066.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 22655174..22655377 | 1..205 | 98 | | Minus |
| 2R | 22654834..22655081 | 206..453 | 97 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 21:53:20 Download gff for
FMO13066.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 18542339..18542586 | 206..453 | 97 | <- | Minus |
| arm_2R | 18542679..18542882 | 1..205 | 98 | | Minus |
