FMO13068.5prime Sequence
1146 bp (1032 high quality bases) assembled on 2013-01-30
> FMO13068.5prime
CAGTCGACATGGCTTTCCTATGTGCACCGGGTCTCACCTTCTTCCTCACC
TACTCGATTTTCTCGGCGGTGCTGGGCATGCTGCAATTCGGCTACAACAC
CGGCGTCATCAACGCGCCCGAAAAGAATATCGAGAACTTCATGAAGGACG
TCTACAAGGACCGCTACGGCGAGGACATCAGCGAGGAGTTCATCCAGCAG
CTCTACTCGGTGGCGGTATCCATTTTCGCCATCGGCGGCATGCTGGGCGG
TTTCAGCGGAGGCTGGATGGCCAACCGCTTTGGCAGAAAAGGCGGCCTAC
TGTTGAACAATGTGCTCGGAATTGCCGGCGCCTGTTTGATGGGATTTACC
AAAGTTAGTCATTCCTATGAAATGTTATTCCTTGGCCGATTTATAATTGG
TGTTAATTGCGGCCTCAACACTTCGCTGGTGCCCATGTACATCTCGGAGA
TAGCGCCACTGAATCTGCGCGGTGGCTTAGGAACTGTTAATCAATTGGCT
GTGACTGTAGGTTTACTATTATCCCAAGTGCTGGGCATCGAGCAAATCCT
CGGCACCAACGAGGGCTGGCCCATCCTCCTGGGCCTGGCCATCTGCCCGG
CGATCCTGCAGCTGATCCTGCTGCCCGTCTGCCCGGAATCGCCCAGATAT
CTGCTCATTACCAAGCAGTGGGAGGAGGAGGCGCGAAAAGCCCTGCGCCG
ACTGCGAGCCTCTGGGTCCGTGGAGGAGGACATCGAGGAGATGCGGGCCG
AGGAGCGCGCCCAGCAGTCCGAGAGCCACATATCGACCATGGAGCTGATA
TGCTCGCCCACCCTGCGCCCTCCGCTGATCATCGGCATCGTGATGCAGCT
GAGCCAGCAATTCAGCGGCATCAACGCCGTCTTCTACTATTCCACGTCGC
TGTTCATGAGCTCGGGATTGACTGAGGAGAGCGCCAAGTTCGCTACGATA
GGCATCGGCGCCATAATGGTTGTTATGACGCTCGTGGTCCATTCCGCTAA
TGGATCGCACGGGTCGCCGGACCCTGCAATCCTCTATGGTCTCTGGCGGA
ATGTTCCTCTTCTCATCTTTCATCCACATTTCGTTTCTGATCAAGGGGTT
CTTGGTATGTGGCCGAATGATGTCCTTGAATGTCCTACCTCTCTGG
FMO13068.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 18:31:07
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Glut1-RE | 2188 | CG43946-RE | 577..1715 | 5..1145 | 5265 | 97.9 | Plus |
| Glut1-RZ | 7304 | CG43946-RZ | 577..1664 | 5..1096 | 5225 | 98.9 | Plus |
| Glut1-RY | 7646 | CG43946-RY | 577..1664 | 5..1096 | 5225 | 98.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 18:31:05
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 981824..982105 | 689..970 | 1410 | 100 | Plus |
| 3L | 28110227 | 3L | 981486..981765 | 411..690 | 1400 | 100 | Plus |
| 3L | 28110227 | 3L | 980950..981207 | 29..286 | 1290 | 100 | Plus |
| 3L | 28110227 | 3L | 981292..981421 | 283..412 | 650 | 100 | Plus |
| 3L | 28110227 | 3L | 982174..982298 | 968..1096 | 345 | 89.9 | Plus |
Blast to na_te.dros performed on 2014-11-28 18:31:05 has no hits.
FMO13068.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2013-01-30 10:17:59 Download gff for
FMO13068.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Glut1-RE | 572..1713 | 1..1146 | 97 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 21:59:45 Download gff for
FMO13068.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Glut1-RE | 574..1715 | 1..1146 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:03:50 Download gff for
FMO13068.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Glut1-RE | 574..1715 | 1..1146 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 19:03:50 Download gff for
FMO13068.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 981826..982103 | 691..968 | 100 | -> | Plus |
| 3L | 982175..982298 | 969..1096 | 91 | == | Plus |
| 3L | 981296..981420 | 287..411 | 100 | -> | Plus |
| 3L | 981487..981765 | 412..690 | 100 | -> | Plus |
| 3L | 980951..981207 | 30..286 | 100 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 21:59:45 Download gff for
FMO13068.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 981296..981420 | 287..411 | 100 | -> | Plus |
| arm_3L | 982175..982298 | 969..1096 | 91 | == | Plus |
| arm_3L | 980951..981207 | 30..286 | 100 | -> | Plus |
| arm_3L | 981487..981765 | 412..690 | 100 | -> | Plus |
| arm_3L | 981826..982103 | 691..968 | 100 | -> | Plus |
