FMO13073.5prime Sequence
683 bp (683 high quality bases) assembled on 2013-01-30
> FMO13073.5prime
CAGTCGACATGCACCAGGAGCAGATCAACGTCATCCGCAAGGCCCTGCGC
AAGTTACGCGGCATGCGGCTGGATCCAACCGTGACCCAGCACACCACCCA
CCTGGTTAGCCTGGAGCCGCGACGTACCCTGAATCTCCTGCGCGGATTGA
TGCGCGGAGTCTGGATAGTTAGCTACCAGTGGGTGTTGGCCTCCATTCGG
GCTGGCAAGTGGATCAATGAAGAGCCCTATGAGCTGACCAGGTTTTCGCG
TGCAATCGAGATTTGTCGTACAGAAAGGCAGGCCTTTGGCGTCCACTACC
AGTGTGAGTTGTTTCGCTTTATGGAGCCCTTCTATGTGTCCTCCCTCTGC
CGACCGGTGCAGTTCAACAATATGAAGGAGCTGCTCCTGCTGGGCGGTGC
CACCCTGACCGAGAACCGCTTCAAGGCCAAGTACATCATCGGGGACAAGC
GGCGCGCCGAGGACGATCGCGTCTATCTCGATCCTTACTGGGTGCTGGAC
AGCATCACGAATATGCAAATTCAGCGCTTTGGCAAATATCTTATGAAGAG
CGCCATTATCTCGGCCGATGGGATCCGGTACGAGGATCCTAGGGATCGCG
ATGAGGACAAAACACAAAGAAGGCACCTTCACGACTTCGTCGATCCACCG
TTTGTGCTGGACAAAGCAAGCTTTCTAGACCAT
FMO13073.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 18:31:30
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| MCPH1-RD | 3360 | CG42572-RD | 2571..3229 | 7..665 | 3295 | 100 | Plus |
| MCPH1-RC | 3149 | CG42572-RC | 2360..3018 | 7..665 | 3295 | 100 | Plus |
| MCPH1-RB | 2872 | CG42572-RB | 2571..2606 | 7..42 | 180 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 18:31:28
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 11896128..11896534 | 665..259 | 2035 | 100 | Minus |
| 2R | 25286936 | 2R | 11896596..11896816 | 260..40 | 1105 | 100 | Minus |
| 2R | 25286936 | 2R | 11897108..11897143 | 42..7 | 180 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 18:31:29 has no hits.
FMO13073.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2013-01-30 10:18:02 Download gff for
FMO13073.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| MCPH1-RC | 2355..3018 | 1..665 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 21:59:57 Download gff for
FMO13073.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| MCPH1-RC | 2355..3018 | 1..665 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:04:04 Download gff for
FMO13073.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| MCPH1-RC | 2355..3018 | 1..665 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 19:04:04 Download gff for
FMO13073.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 11896128..11896532 | 261..665 | 100 | <- | Minus |
| 2R | 11896596..11896814 | 42..260 | 100 | <- | Minus |
| 2R | 11897109..11897148 | 1..41 | 92 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 21:59:57 Download gff for
FMO13073.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 7783633..7784037 | 261..665 | 100 | <- | Minus |
| arm_2R | 7784101..7784319 | 42..260 | 100 | <- | Minus |
| arm_2R | 7784614..7784653 | 1..41 | 92 | | Minus |
