FMO13077.5prime Sequence
1039 bp (1002 high quality bases) assembled on 2013-01-30
> FMO13077.5prime
CAGTCGACATGAGCTGCTTTGGCTGCGGTCGCAAATATGGCCTATTCTGC
AAGGAGTATGGATGCCCCAACTGCGGCTACTCATTCTGCTCCAAGTGCTT
GAAGAGACCAATGCCCGTGCCCCGTCATGCAGGAAAGGTGCACAATGTGT
GCCTCATATGCTACGACAAACTATCCAAACTCCAGGCGAGCGCCGATGCC
GAGAAAGTTATAGACTGTGATGCTTTGCCGGGGATCTTAGTCACCAAAAT
GAACCTGGCTCCTCCATCCAAAAGTTCAGATGGCGCCGATGCCCTATTCA
ACGACAGCCTGCCTGTGGAGGAGCTGCCACAGGCATTGGTTCCCAGTTCC
AGTTCGTCACCACATTCCAAAGATCACAAGGATCATATTGATGAGAACCT
GGACAGTGAGTTGACCAAACGAATGCAGGACTATAAACGAGTTGATGCCA
CCGATGATGAGATCCGCACCCGTCTGGCCAATCTCACTGGGATGCCGCAT
ACGAAAAGCTACGATAAGAAAGATCTGCTACTGTCCACCGACCAAAGAAA
CGATCAGGAGAAAATGAGGGACTTGCTCGCACAATTCGTTGACGAAGCCC
AACTGGATCAAAATATCAGCAGGCAGAGGGATGACTCAATTTCCGACATT
GAGAGACGTCTGCGAGCTCTGCGCGATACACCCGTCGATTCCGATGCATG
CCCATCGAGATCCCAGATGGAAAGTATCGCGGACAACGAAGAGGATGACG
AGACACTTCTACAGAACATATTGAAAAAGTATGTAGCAGAATCGCGCTTA
CCAGAACCTTCCGAGAGTGAAATTAGTCCAATTAACACTGAGTCGCCCGG
CAACACCGAAGATTGCCCTGGTGCAATATTTGTAACGAAGACGCCGACTT
CGATGCCACGGATGTGGTGGGGAACTCTTTTGCACTCTATGCTATATGAG
TGCCACGATGATGACGAGGAGTACGTGCTCCCGTTATGAAAAGTATCGGC
TCCGCAAGCTAAGAAAATCACTTCGCAGCTTTCTAGACA
FMO13077.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 18:31:58
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG15602-RB | 1342 | CG15602-RB | 249..1274 | 9..1024 | 4855 | 98.7 | Plus |
| CG15602-RA | 1172 | CG15602-RA | 79..1104 | 9..1024 | 4855 | 98.7 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 18:31:56
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 15800096..15800573 | 302..779 | 2390 | 100 | Plus |
| X | 23542271 | X | 15799791..15800037 | 55..301 | 1235 | 100 | Plus |
| X | 23542271 | X | 15800637..15800836 | 778..974 | 835 | 98 | Plus |
| X | 23542271 | X | 15799674..15799721 | 9..56 | 240 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 18:31:57 has no hits.
FMO13077.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2013-01-30 10:18:05 Download gff for
FMO13077.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG15602-RA | 79..1109 | 9..1031 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:00:12 Download gff for
FMO13077.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG15602-RA | 79..1109 | 9..1031 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:04:17 Download gff for
FMO13077.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG15602-RA | 79..1109 | 9..1031 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 19:04:17 Download gff for
FMO13077.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 15799674..15799721 | 9..56 | 100 | -> | Plus |
| X | 15799793..15800037 | 57..301 | 100 | -> | Plus |
| X | 15800096..15800573 | 302..779 | 100 | -> | Plus |
| X | 15800639..15800898 | 780..1031 | 93 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:00:12 Download gff for
FMO13077.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 15693707..15693754 | 9..56 | 100 | -> | Plus |
| arm_X | 15693826..15694070 | 57..301 | 100 | -> | Plus |
| arm_X | 15694129..15694606 | 302..779 | 100 | -> | Plus |
| arm_X | 15694672..15694931 | 780..1031 | 93 | | Plus |
