FMO13078.5prime Sequence
1133 bp (1051 high quality bases) assembled on 2013-01-30
> FMO13078.5prime
CAGTCGACATGCGGTTCTATATAACGACCCATTTGCCGGCCATCCTGCTC
GCTTTGATCTGCCTGGGGACACGCCCCCCACCCATCGGGGCGGTTAGGGG
CGGATCACCTGTTGTGGTCATCGATGAGGATGACGAAACCATGGAGTACG
CCCCGCATTATGAGCATCAGGGCTACGCCTTCAGCTACGGAGTCAAGGAT
CTGCACACTGGGGATGTGAAATCCCAGTGGGAGTCCCGCGATGGCGATGG
GGTCAAGGGTCACTACAGCGTACTGGAACCAGACGGCTCCATACGAACGG
TTCACTACACAGCAGACGCCAAGAAGGGATTCAATGCGATTGTCAAGACA
GTGGGCGCTAATTCGCATCCAATCACAGAGAGCCCGGAGGGCAGTAACCA
AGTGAACGATGATACCTCACAGTCAAAGATCAACCACTACAGCAAGGATC
AGGAGCACATTGTGCTCAGTTCGGACATCAAGCCTCTGAAGAGGCCCATC
GAGGACTTGACTCACTCCCATCCGAAGGTGCCCAGCTTGATTGAGATCAA
GCCGCACGCCAGGATCAAGCAGGTACCCATGGACATGGATCCCGGTATCA
GGGACCGTCTGCAGCAGGCCAGGGATACTTACTACAAGCAAATAGCCGCT
GCCCATAAACTAGAGGACTACTCCCAGAAACTTCAGCCCACCTACGCAGT
GCAGGAGGGCGATTGGAAGGCGGTGATCGTGAATGAGCCCAAGGAGTACC
GACCCCATTACACCACCGGATCCCCGGCGCACTCCCACTTCTACGACCAC
TACAAGCCCAAGGAGATCCCCCACAACTACATACACAAGCCGTCGGTTCC
ACAGCAATCGCTGCACACTAGTTTCTCCCCTCAAGCCCAGGATTAACATC
CCCGAGAGCATTTCCAACCACATTCACAGAGGATGGTGGTTCACACCACG
CCTGGCTTGAGCACTACAAGTACAGGCGTGTTCCAAGTCTACTCCCGACC
CGATTACTCCAGCTACTTCCACCGTAAGCCCAGAGCTGCGTCCCAGCATC
CCAGCAGAGGCCACGTGCCACCGACCGAGAATCGGTCCGGTTCCTTCCAA
GCTAAGAGAGGTTGAGGACTCAGAGACAACGGG
FMO13078.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 18:32:00
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Cpr76Bc-RD | 1838 | CG9295-RD | 432..1540 | 5..1098 | 5100 | 98.2 | Plus |
| Cpr76Bc-RC | 1516 | CG9295-RC | 110..1218 | 5..1098 | 5100 | 98.2 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 18:31:59
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 19526023..19526940 | 162..1069 | 4030 | 97.7 | Plus |
| 3L | 28110227 | 3L | 19523237..19523378 | 21..162 | 710 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 18:32:00 has no hits.
FMO13078.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2013-01-30 10:18:06 Download gff for
FMO13078.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Cpr76Bc-RC | 106..1218 | 1..1098 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:00:13 Download gff for
FMO13078.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Cpr76Bc-RC | 106..1218 | 1..1098 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:04:20 Download gff for
FMO13078.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Cpr76Bc-RC | 106..1218 | 1..1098 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 19:04:20 Download gff for
FMO13078.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 19523237..19523377 | 21..161 | 100 | -> | Plus |
| 3L | 19526023..19526974 | 162..1098 | 97 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:00:13 Download gff for
FMO13078.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 19516337..19516477 | 21..161 | 100 | -> | Plus |
| arm_3L | 19519123..19520074 | 162..1098 | 97 | | Plus |
