FMO13079.5prime Sequence
1129 bp (1028 high quality bases) assembled on 2013-01-30
> FMO13079.5prime
CAGTCGACATGTCTGGCGGAACGCAAGGGATTCGCAAGCTGGCGGATAAG
CTATTCACACCCAACGAAATTAGACGTTTCCAGGCATACAAGAACCGCCT
CAGTGAAAAGTATTTGACCGTGGAGGGCTTAAAGTCCACCTTCAAGAGAC
CGGATTTGGGAAAACTATTCAACCGTCGCGTGTTTTCATCAAACAAAGAA
GATTGCCCCGAAGAGCCAAAAGTTAAGGAATGTGACCCCAGCTGGGATGA
GCTGTATCCTCCAGGCCCGCCATACGAGCCCTATGACACACACTACTGGT
ATCCAGATCCCGAGTTCATGAATAAACAACAGTATATAGTTTGGTATCCC
GAAGGTGACGAGTGGAAAAAGCGTCCCAATTTTAAGGGAAAACAGATTCC
ACCCGTTGATCGTACATTTCGCACCAAGCTCATAAACTTTGGACCCGCGC
ATCCGGCGGCACACGGAGTACTCCGCATGATCCTCGAGCTGGATAATGAA
ACGGTGCTGAATGCCGATCCGCACATTGGGCTACTGCATCGCGGAACCGA
GAAACTGATCGAGTACAAGACGTACACTCAAGCACTGCCCTATTTCGATC
GTCTGGACTATGTGTCCTGCATGGCCAATGAGTTGGCCTACTGCTTGGCG
GTGGAGAAGTTGCTGAATGTGGAGGTTCCACGCCGGGCCAAGTACATACG
CACCATGTTTTCGGAGATAATGAGGCTGACGAATCACACGATGGCCATTG
GTTCGTCGGTACTGGACTGTGGAGCTATAACTCCACTCTTTTGGCTGTTC
GAGGAACGTGAGAAGTTGTATGAGTTTTCGGAACGCGCTTCGGGAGCTCG
TCTCCATGCCGCCTACATTCGACCGGGGGGCGTGGCCAGTGATATACCTC
TAGGGTTTCTCCACGATTTGTATCAGTTTATCAATCAATTCACGACGATT
GACGAGTGGTAGACGTAGTGACCGATATCGCATCTGGCGTATGCGTAATA
TTGGCATGAGTCATATCCGCACACGATGCCTAACTTTGGATGCCCTGGAC
CGTCTGAGGGCACCGGCGTAAGTGGAATTTGCTAGCACAGCCCACCATGC
TATGACCGAATGATTGACGTGGTTGGATC
FMO13079.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 18:32:08
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG11913-RB | 1700 | CG11913-RB | 23..1110 | 8..1082 | 5060 | 98.3 | Plus |
| CG1970-RB | 1584 | CG1970-RB | 383..543 | 450..610 | 250 | 77.8 | Plus |
| CG1970-RA | 1573 | CG1970-RA | 372..532 | 450..610 | 250 | 77.8 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 18:32:06
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 25358548..25359409 | 199..1051 | 3875 | 98.3 | Plus |
| 3R | 32079331 | 3R | 25358307..25358500 | 8..201 | 970 | 100 | Plus |
| 4 | 1348131 | 4 | 570067..570165 | 610..512 | 240 | 82.8 | Minus |
Blast to na_te.dros performed on 2014-11-28 18:32:06 has no hits.
FMO13079.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2013-01-30 10:18:07 Download gff for
FMO13079.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG11913-RB | 16..1053 | 1..1031 | 98 | == | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:00:17 Download gff for
FMO13079.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG11913-RB | 16..1053 | 1..1031 | 98 | == | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:04:23 Download gff for
FMO13079.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG11913-RB | 16..1053 | 1..1031 | 98 | == | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 19:04:23 Download gff for
FMO13079.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 25358300..25358500 | 1..201 | 98 | -> | Plus |
| 3R | 25358551..25359387 | 202..1031 | 98 | == | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:00:17 Download gff for
FMO13079.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 21184022..21184222 | 1..201 | 98 | -> | Plus |
| arm_3R | 21184273..21185109 | 202..1031 | 98 | == | Plus |
