FMO13080.5prime Sequence
1073 bp (1002 high quality bases) assembled on 2013-01-30
> FMO13080.5prime
CAGTCGACATGGACTGCAGAGCGAACTTCCTGGCCTACTTGGCCGTGTTT
CTTCATCTAGTCAGCGATTACTGTTTCGTACCTGTGCAATGCGTGGACGC
ACCCTTCATCCACATTCCGGGCAACGGAGTCATTTCCGGAACCTATCTGA
AGATGTTCCGGACGCAGAACATCAAGGCCTACCTGGGCATTCGCTATGCA
CATGCCAGGAGATTCCAGCCGCCGGATATCGAACTAACACCCTGGAAGGG
CATTTTCAATGCGACCGTCTTCCAACCGGACTGCTGGCAGAACGCCATGC
CTTCCGTGGGCAAAGAAACCGAGCAGATCCTGAAAATCATACAGTCCGAC
TCGAGTGCCCAGGATGCGGAGAGGAAGTACGAGGAGAACTGCTTGTATCT
GAACGTCTTTGTACCTGATGGACTGCCCGAAATCAATGGATACGCAGTTG
TTGTGTGGATCCATTCCGGCGACTTCTCCACTGGCAGTCCGGCGGATGTG
GAGCCATTCCAGTTGGTCTTCAAGCAGAAGGTGATTGTGGTGACCTTCTC
GTATCGGCTGAACATCTTCGGGTTCTTCACCACCGACGACGGCGAGGCCC
AGGGAAACTATGGCCTGATGGACCAGTCAGCCGCGCTCTACTGGGTCAAG
AAGAACATTAATTTCTTTGGCGGAGACTCGAATCGGATTACCCTGATGGG
CCACGATGCGGGGGCCGTGAGTGTGGCGCTGCACATGACGTCGGGTGAGT
GGTCGAAGGGTGGGTTCCACAAAGGCCATCATAATGTCGGGCAATCCGCT
GAGTACCGTCAAAATGCCGTACGAGTACGAGGGATCGCTGGACCAGTGTC
CAGCACCTTCGCCTGTCCGCGAAGGCCAACCTCGATGTTTATCCAGTGCC
TGAGAGGATCGATGCCAAGCGGCTCTCGGAGACCTGCCCAGGTGAGCTGG
GGACCCGTGGTGGACTTTGGCCTGACACACTTTCTATTCGTTCATCGAAA
AACAGCCGGAGATCCTTTTCAGAAGGCAAGCTACCAAAGGGTTCCCGTCA
TTTATTGGAGTGTACCAACATGA
FMO13080.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 18:32:14
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG10339-RA | 1963 | CG10339-RA | 51..1119 | 8..1072 | 4975 | 98.2 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 18:32:12
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 24079096..24079734 | 1052..420 | 2700 | 97.3 | Minus |
| 2R | 25286936 | 2R | 24080064..24080477 | 421..8 | 2070 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 18:32:13 has no hits.
FMO13080.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2013-01-30 10:18:07 Download gff for
FMO13080.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG10339-RA | 1..1068 | 9..1072 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:00:21 Download gff for
FMO13080.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG10339-RA | 42..1119 | 1..1072 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:04:26 Download gff for
FMO13080.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG10339-RA | 42..1119 | 1..1072 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 19:04:26 Download gff for
FMO13080.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 24079078..24079733 | 421..1072 | 97 | <- | Minus |
| 2R | 24080065..24080480 | 1..420 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:00:21 Download gff for
FMO13080.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 19966601..19967256 | 421..1072 | 97 | <- | Minus |
| arm_2R | 19967588..19968003 | 1..420 | 99 | | Minus |
