FMO13081.5prime Sequence
1123 bp (1021 high quality bases) assembled on 2013-01-30
> FMO13081.5prime
CAGTCGACATGCCAGATATGAAGACACCACTGCTTGGCTTTCTTACTACA
GTGATCGCAATCTCTGCAGGTGCTCCCGACTGGCAGTTGCCCTGCGATTT
GCGCGAAACGAGCCATGGAAGCGTGTGTGTCTGCAACAGCACCTACTGCG
ATTATCTGGAACCGCCCCAGCTCACTGATATCTCGCAGATTGTGGTGATT
AGCTCCAGCAAGGATGGCTTACGCTTCAAGAAGACGACAGGGGATCTCTC
GAAAAAGAAACCCATAACAATAGATGACAAACAGTTCACCGATGAGAACT
TCAAGGCAGATGCAATTGTTGTGGATCAGGAGAGGGCCTGGTTGCAGTTG
GCCAACATTCCCCAAAGCCTGTTTATTAATGCCAGCATTAAGACATATCG
CATATTCGTGAAACGAGAGCAGAGTTTTCAAAATGTCTCCATTTTTGGTG
GGGCATTTACAGGAACAGTCTCGTACTTACTCAAAGAACTTCCGGTGGAG
CTACAGGATCATGTCTATAGATCCTATTTTCATCCGGTTGGAATTGCTTA
CAACACTATACGAATGTCCATTGGCGGTTCCGACTTTGATATGGAACCCT
GGGCATACAATGAATTGCCTCTTCATGATCCGAAATTGAGCAACTTTACC
GAACTCGATCCGCGGGATCTGCAGAAAGTGGAACAGTTGAAACGCCTTAA
GATCATCGGTAAAGTAGATTCTCTGAAAATCATGGGCGCTGCCTGAGTGC
TCCAACCTGTATGAAGAGCAATAATCGCTGGACAGGATTCGGGCAGCTGA
AATCGGAATACTATCAAACGTGGGCCCTCTATCACCTCAATTTCTCGAAC
TCATGCGGTCTAAAATATGCCGATTTGGGCCATATCCACTGGCATGAGCC
GTTAAACGGCGTCATTGGCTTCTTTTTTTGTACACTCATGAGCATGGGCT
GGACGCCCTGCAGCAGCTATCTGCTGACGACATCTGGGCCCGACATCAGA
AACTCGGCGGAGAGCAGGTGCTTCATCTTTGGCCACGACGATCACGGTAA
ACCTACCCCACTGGTTCGATGATTGCCCCTCCTCCCGCACCATCCGCTGA
CTACTGATTGCTAACTGTCACTT
FMO13081.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 18:32:21
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG31414-RC | 2335 | CG31414-RC | 30..1104 | 5..1067 | 4910 | 98.1 | Plus |
| CG31414-RB | 2030 | CG31414-RB | 30..1104 | 5..1067 | 4910 | 98.1 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 18:32:19
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 23705779..23706101 | 519..840 | 1550 | 99.4 | Plus |
| 3R | 32079331 | 3R | 23705348..23705509 | 211..372 | 810 | 100 | Plus |
| 3R | 32079331 | 3R | 23704960..23705108 | 65..213 | 745 | 100 | Plus |
| 3R | 32079331 | 3R | 23705581..23705728 | 373..520 | 740 | 100 | Plus |
| 3R | 32079331 | 3R | 23706159..23706281 | 840..960 | 420 | 96.8 | Plus |
| 3R | 32079331 | 3R | 23704833..23704899 | 5..71 | 320 | 98.5 | Plus |
| 3R | 32079331 | 3R | 23706386..23706464 | 982..1058 | 190 | 88.6 | Plus |
Blast to na_te.dros performed on 2014-11-28 18:32:20 has no hits.
FMO13081.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2013-01-30 10:18:08 Download gff for
FMO13081.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG31414-RB | 28..1104 | 1..1067 | 97 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:00:24 Download gff for
FMO13081.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG31414-RB | 28..1104 | 1..1067 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:04:29 Download gff for
FMO13081.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG31414-RB | 28..1104 | 1..1067 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 19:04:29 Download gff for
FMO13081.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 23704831..23704897 | 1..69 | 94 | -> | Plus |
| 3R | 23704965..23705107 | 70..212 | 100 | -> | Plus |
| 3R | 23705350..23705509 | 213..372 | 100 | -> | Plus |
| 3R | 23705581..23705728 | 373..520 | 100 | -> | Plus |
| 3R | 23705781..23706101 | 521..839 | 99 | -> | Plus |
| 3R | 23706159..23706288 | 840..965 | 95 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:00:24 Download gff for
FMO13081.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 19531503..19531823 | 521..839 | 99 | -> | Plus |
| arm_3R | 19530553..19530619 | 1..69 | 94 | -> | Plus |
| arm_3R | 19530687..19530829 | 70..212 | 100 | -> | Plus |
| arm_3R | 19531072..19531231 | 213..372 | 100 | -> | Plus |
| arm_3R | 19531303..19531450 | 373..520 | 100 | -> | Plus |
| arm_3R | 19531881..19532010 | 840..965 | 95 | -> | Plus |
