FMO13082.5prime Sequence
1119 bp (1035 high quality bases) assembled on 2013-01-30
> FMO13082.5prime
CAGTCGACATGAAGGTCTTCAGCCTAAGTCTTTTGCTGGTGGCCGCCCTC
CCTCTGATGTGCCACGCCCTTCCAGCTAGCGATAAGTCCCTTTCCCTGGA
AGACACAGATCTGGACAACGAACCGGGCGAGAGTGTAAAGGAGTCCCAGG
TGCAAAAGCGGTCCGGCAGCTTCGACTACGTGGCGCACCTGAAGTCCGGC
CTGCTGTCGGGAATTGGCCAGGCCTCCGCCTCAATCGCCTCCGGCAGTTC
CGGCGGAAGCAGCGGTGGCGGTGACAGCTACAAATCCCACGAGATCGTTG
TCCATGGCAACTCTGTGGACTACGATCCCTGGTCTTTTAAGAAATCCGTG
CTGAACACTATCTTCCAGGCGGTCAAGGCCATCACCGGCGGAGTCACCGC
ACTCAAGGGTCAGCTGATCAAGGGCAGCGGCTACGCGCTGAGTGCGGGTG
GCAATCTGGTGGCCGCCGGCGGCGACAAGGTCACCGATGTGGGCAAGTCC
ATCATCAACTCGGCGCACATCAACTCGCACACCTACGCCACTAGTCACTC
CTCCTCCGGCGGCGGTCTGTTCGCCAAGCTGACCTCCTTGTCGGGCGCCT
CCTCCGGCGGCAGCAGTGGGCACAAGACCGTCTCCGCACCTGGACCCGTT
GTGCATCACGAGACGATCACCACGTACGAGATACCCACTGGCCACGCCAG
CTACGGTCCGCCATCGAAGCCCCCGACCTACAGCAGCGCCACCCATCAGT
ACCTTCCGCCGGTGGGCGGGGCTAGCTACGGCGGCGGGGCGCCCTTCAGC
GTTAGCCACCCGGCGGCCTTCGAGTCGCCGCCAAGCAACTATCTGCCATC
GGCCTATGGACAGATGCGACCAGCGCAAATAGCAATGACTTTAACATCTA
TGGGCCGCCACTCAAAGCTACCGGATGAGGAAGCCCGCAAGGCGCCGCCA
CAGCTCCAGGAGATCCTCAGCTTGTTGCCCAACGGGAAAACTGAGTACAC
GGCCTCCAGACAGTGCCTTTGGATACCAGTTTGCCAACGGGTACGGTTGG
ACAGCCGAGGTTATACAGCTATGGCTACGCTGCCAGTACCTGGTCACCTT
GGAGTCCTGTCGCACAAGT
FMO13082.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 18:31:10
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG14257-RB | 2628 | CG14257-RB | 380..1503 | 5..1116 | 5180 | 98.1 | Plus |
| CG14257-RC | 1497 | CG14257-RC | 380..1237 | 5..862 | 4275 | 99.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 18:31:08
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 27079039..27079401 | 301..663 | 1800 | 99.7 | Plus |
| 3R | 32079331 | 3R | 27078660..27078953 | 13..306 | 1470 | 100 | Plus |
| 3R | 32079331 | 3R | 27079879..27080077 | 664..862 | 995 | 100 | Plus |
| 3R | 32079331 | 3R | 27081432..27081612 | 866..1046 | 750 | 96.7 | Plus |
Blast to na_te.dros performed on 2014-11-28 18:31:09 has no hits.
FMO13082.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2013-01-30 10:18:00 Download gff for
FMO13082.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG14257-RB | 365..1493 | 1..1119 | 97 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 21:59:46 Download gff for
FMO13082.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG14257-RB | 378..1506 | 1..1119 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:03:53 Download gff for
FMO13082.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG14257-RB | 378..1506 | 1..1119 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 19:03:53 Download gff for
FMO13082.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 27078654..27078952 | 7..305 | 99 | -> | Plus |
| 3R | 27079044..27079401 | 306..663 | 100 | -> | Plus |
| 3R | 27079879..27080082 | 664..866 | 99 | -> | Plus |
| 3R | 27081433..27081696 | 867..1119 | 92 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 21:59:46 Download gff for
FMO13082.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 22904376..22904674 | 7..305 | 99 | -> | Plus |
| arm_3R | 22904766..22905123 | 306..663 | 100 | -> | Plus |
| arm_3R | 22905601..22905804 | 664..866 | 99 | -> | Plus |
| arm_3R | 22907155..22907418 | 867..1119 | 92 | | Plus |
