FMO13083.5prime Sequence
1136 bp (1009 high quality bases) assembled on 2013-01-30
> FMO13083.5prime
CAGTCGACATGGATCTAGCAGATCAAATCGATGACTATATCTGTTCGTTC
GAGGGACTTGGTGACTTAACAATGGACTCCCTGGCCATCTTCATTTTCCT
GTGGGCCGTTCTGGCCCTCTTCTCCGTGTGGCTAATCAAGCTGCTCTACC
ACAAGTATCTCAACAAGGACAAGTCGGCCAGTGCGGCCAACAGTCGCCAG
ACGAGCGTGGCCCCCACATCCGGATCACCCACGTCCGTCGCCGGCAAGAC
GGAGAAACGTCTCTCGGAGCCGCGCGATCTCCTGGCCACCAAGAGCAAGG
TTGAAGGCTTGGACTTATCCAAGCCTCTGGCCGGCGCATCCGGTGGCCGA
GGACGTTCATCAGCATCGCCATTGAATACCGCTGGTGCAGCTGCCGGCGG
TCCACGTCGTCGGGTGGTGCGTCAGAGTTCCACTGGGCCAGAGAATCGCA
AGAAGCGCTATGTCCCACCGCCATCGAATGTCGTGGGTCCAGAAACGAGC
TCCGTCACCTGGACCAGCCAAGTGTTTCGCTGGCTTTATAGCGACCTGGT
CATCGTCAACGAGCTGCTCATGTCCTGGGTAATCGCCATCAACGACACGC
TGCGCAAGTCTGTGGAGGAGCATGGAGTGGCCGTTGAAGTGGTTCGAGTG
CTACCCGACAGTCCTGCCCCCGGATTGAATAATATATTTTGTAATTGCGA
TGAAAACAATCCCGCTGATATGCTCATCACCTTTGACTGCGATGCAATGC
CGGTGTTGCACGTGAAGACCTTCCGCCAAAAGTCGGGCAGGTGGAGACCT
CCCACTACAAGGTCACCGTGTCTAGGTTCCGCGCCCGTATGGCCATTCCC
ATGAACTACAACAGCCTCAAGGGTGAGATGCGAGTCGAGGGCTATCCGGA
TGTTCGCATCGCGATGAACAGCGTGGGTGCCATCAAGGCAATGGATCAGA
TGAACAGCAATTGCAGACGGTGATCAGCGACATCCTGACGACGCTTTGCC
CGAACACCATCTTTCCGGTTGAACTCCTCCATTTACTCCACCTGTCCAAG
GCCGAATGGAGCCCTGGACTGCCGTATTCTAATCCGTTCACTATTGAACT
CGCTGGGGCCACACATGGAACACACACATTGGGGTG
FMO13083.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 18:31:18
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG10737-RT | 3049 | CG10737-RT | 89..1203 | 9..1119 | 5115 | 97.9 | Plus |
| CG10737-RU | 2771 | CG10737-RU | 240..1354 | 9..1119 | 5115 | 97.9 | Plus |
| CG10737-RW | 3109 | CG10737-RW | 240..1354 | 9..1119 | 5115 | 97.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 18:31:15
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 19170673..19171161 | 9..497 | 2445 | 100 | Plus |
| 2R | 25286936 | 2R | 19172344..19172526 | 722..903 | 850 | 98.9 | Plus |
| 2R | 25286936 | 2R | 19171252..19171375 | 497..620 | 620 | 100 | Plus |
| 2R | 25286936 | 2R | 19172177..19172280 | 619..722 | 520 | 100 | Plus |
| 2R | 25286936 | 2R | 19172712..19172861 | 902..1051 | 505 | 92.1 | Plus |
Blast to na_te.dros performed on 2014-11-28 18:31:16 has no hits.
FMO13083.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2013-01-30 10:18:01 Download gff for
FMO13083.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG10737-RU | 323..1396 | 9..1076 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 21:59:50 Download gff for
FMO13083.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG10737-RW | 240..1358 | 9..1123 | 97 | <- | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:03:57 Download gff for
FMO13083.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG10737-RW | 240..1358 | 9..1123 | 97 | <- | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 19:03:57 Download gff for
FMO13083.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 19170673..19171161 | 9..497 | 100 | -> | Plus |
| 2R | 19171253..19171375 | 498..620 | 100 | -> | Plus |
| 2R | 19172179..19172280 | 621..722 | 100 | -> | Plus |
| 2R | 19172345..19172524 | 723..901 | 98 | -> | Plus |
| 2R | 19172712..19172861 | 902..1051 | 94 | == | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 21:59:50 Download gff for
FMO13083.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 15059850..15060029 | 723..901 | 98 | -> | Plus |
| arm_2R | 15060217..15060366 | 902..1051 | 94 | == | Plus |
| arm_2R | 15058178..15058666 | 9..497 | 100 | -> | Plus |
| arm_2R | 15058758..15058880 | 498..620 | 100 | -> | Plus |
| arm_2R | 15059684..15059785 | 621..722 | 100 | -> | Plus |
