Clone FMO13084 Report

Search the DGRC for FMO13084

Clone and Library Details

Library:FMO
Tissue Source:D. melanogaster
Created by:Charles Yu
Date Registered:2006-03-07
Comments:BD Creator expression clones with C-terminus FLAG HA tag for tissue culture
Original Plate Number:130
Well:84
Vector:pMK33-CFH-BD
Associated Gene/TranscriptCG33170-RB
Protein status:
Sequenced Size:Not sequenced

Clone Sequence Records

FMO13084.5prime Sequence

239 bp (239 high quality bases) assembled on 2013-01-30

> FMO13084.5prime
CAGTCGACATGCTCAAGTTTCTGTTAACTTTTGGCGCCGGGGTGTATACG
GGAATCTATGTCTCACAGAACTATGAGGTCCCCCGAGTGGATGATCCCCA
GAAGTTGATGCAGCGTTTCAACGAGAAACTCAAAGAACTAATGGATCAAA
CCAAGAACAAATCGCCCGGCGAGAAACTAGTGGATGACATCAAAAAGGAG
GCCAAGAAGATACTAGACGACGCAAGCTTTCTAGACCAT

FMO13084.5prime Blast Records

Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 18:31:24
Subject Length Description Subject Range Query Range Score Percent Strand
CG33170-RC 357 CG33170-RC 70..282 9..221 1065 100 Plus
CG33170-RB 599 CG33170-RB 312..524 9..221 1065 100 Plus
CG33170-RA 842 CG33170-RA 211..348 23..160 690 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 18:31:22
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 22865876..22865960 76..160 425 100 Plus
3L 28110227 3L 22867395..22867460 156..221 315 98.5 Plus
3L 28110227 3L 22865770..22865826 23..79 285 100 Plus
Blast to na_te.dros performed on 2014-11-28 18:31:23 has no hits.

FMO13084.5prime Sim4 Records

Sim4 to dmel-all-transcript-r5.32.fasta performed 2013-01-30 10:18:02 Download gff for FMO13084.5prime
Subject Subject Range Query Range Percent Splice Strand
CG33170-RB 302..529 1..228 96   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 21:59:53 Download gff for FMO13084.5prime
Subject Subject Range Query Range Percent Splice Strand
CG33170-RB 302..529 1..228 96   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:04:00 Download gff for FMO13084.5prime
Subject Subject Range Query Range Percent Splice Strand
CG33170-RB 302..529 1..228 96   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 19:04:00 Download gff for FMO13084.5prime
Subject Subject Range Query Range Percent Splice Strand
3L 22865771..22865824 24..77 100 -> Plus
3L 22865878..22865960 78..160 100 -> Plus
3L 22867400..22867465 161..228 94   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 21:59:53 Download gff for FMO13084.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3L 22858871..22858924 24..77 100 -> Plus
arm_3L 22858978..22859060 78..160 100 -> Plus
arm_3L 22860500..22860565 161..228 94   Plus