FMO13087.5prime Sequence
1001 bp (1001 high quality bases) assembled on 2013-01-30
> FMO13087.5prime
CAGTCGACATGCCAATGGTGCCGCCACGGCTGCTGCTGCGTCTGCGGCGG
CCCCTGCACCTGATGGAACTGCGCATCCTGCTGCTCTGCCTGCCGACGCT
GCTCCTGGCCACCACCCTCGAACCAGATCAAAAGTCAATACTCACAGATA
ACGATTGGAAGAAGCTATGGATGCGCGGCGGTATAAATGGCGACTCAAAA
TTGGATAATAATCTCGACTCGAGCGACAGTCCAATGTTTGAAGACAGCGA
GCTGATGGCGCACAACACCACAGTCCAGCTGGGTGGGACCGCCTTTCTGG
TCTGCAAGGTCTCCGGTGTGGACAGAGTGGGTGTAAATTGGAACCAAATA
TCTTGGATCCGCCGCCGGGACTGGCACATCCTGTCGTCGGGGGCCCAGCT
CTACACCAACGACGAGCGTTTCGCCATACTGCACACGCCCGTCTCCAACA
TGTGGACGCTGCAGATAAAGTTTGTGCAGCGCCGGGATCACGGCATGTAC
GAGTGCCAGGTCTCGACACCGACTGGCATCATTTCCCACTTTGTGAATCT
TCAAGTGGTTGTTCCAGAGGCATTCATTCTGGGCTCCGGCGAGCTGCATG
TCGACATGGGCTCAACAATCAATTTAGTTTGCATTATTGAGAAGAGTCCT
ACACCACCGCAGTACGTATACTGGCAAAAGAACGATCGCCTGATCAACTA
CGTCGACTCCCGGCGCGACATAACCATTGAGACGACCCCGGGACCCCGCA
CTCAGAGCCGCCTGATCATCCGGGAACCGCATGTCACGGACTCCGGCAAC
TACACCTGCTCGGCCAGCAACACGGAGCCGGCGAGCATATACGTCTTCGT
TTCGAAAGGCGACAATATGGCGGCAATCTCGCGGCGGAAGACCTCCTCGG
CCGATCGCCTGACGCACATATTTAGGTCGATGCTGGCGCCCTGTCTCCTG
CTGAACACGGGTGTTGTGAGACATATCTTCTGACGCAGCTTTCTAGACCA
T
FMO13087.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 18:32:33
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| dpr12-RC | 4062 | CG34385-RC | 1535..2506 | 9..980 | 4815 | 99.7 | Plus |
| dpr12-RD | 4016 | CG34385-RD | 1504..2460 | 9..980 | 4580 | 98.1 | Plus |
| dpr12-RE | 4583 | CG34385-RE | 1746..2385 | 341..980 | 3155 | 99.5 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 18:32:32
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 5857366..5857582 | 643..859 | 1070 | 99.5 | Plus |
| 2R | 25286936 | 2R | 5855514..5855684 | 341..511 | 840 | 99.4 | Plus |
| 2R | 25286936 | 2R | 5857168..5857305 | 507..644 | 690 | 100 | Plus |
| 2R | 25286936 | 2R | 5852943..5853070 | 124..251 | 640 | 100 | Plus |
| 2R | 25286936 | 2R | 5847353..5847470 | 9..126 | 590 | 100 | Plus |
| 2R | 25286936 | 2R | 5858445..5858558 | 857..970 | 555 | 99.1 | Plus |
| 2R | 25286936 | 2R | 5853710..5853801 | 250..341 | 460 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 18:32:32 has no hits.
FMO13087.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2013-01-30 10:18:09 Download gff for
FMO13087.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| dpr12-RC | 658..1641 | 2..984 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:00:31 Download gff for
FMO13087.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| dpr12-RC | 1528..2511 | 2..984 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:04:36 Download gff for
FMO13087.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| dpr12-RC | 1528..2511 | 2..984 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 19:04:36 Download gff for
FMO13087.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 5857368..5857581 | 645..858 | 99 | -> | Plus |
| 2R | 5858447..5858558 | 859..970 | 99 | | Plus |
| 2R | 5852946..5853070 | 127..251 | 100 | -> | Plus |
| 2R | 5853712..5853801 | 252..341 | 100 | -> | Plus |
| 2R | 5855515..5855682 | 342..509 | 99 | -> | Plus |
| 2R | 5847346..5847470 | 2..126 | 96 | -> | Plus |
| 2R | 5857171..5857305 | 510..644 | 100 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:00:31 Download gff for
FMO13087.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 1734851..1734975 | 2..126 | 96 | -> | Plus |
| arm_2R | 1740451..1740575 | 127..251 | 100 | -> | Plus |
| arm_2R | 1741217..1741306 | 252..341 | 100 | -> | Plus |
| arm_2R | 1743020..1743187 | 342..509 | 99 | -> | Plus |
| arm_2R | 1744676..1744810 | 510..644 | 100 | -> | Plus |
| arm_2R | 1744873..1745086 | 645..858 | 99 | -> | Plus |
| arm_2R | 1745952..1746063 | 859..970 | 99 | | Plus |
