FMO13088.5prime Sequence
197 bp (197 high quality bases) assembled on 2013-01-30
> FMO13088.5prime
CAGTCGACATGTCGGAAACTAGCTCCAAGGATAATGTCAAAACGGCAATG
ACCTATATTTGTGGAGAATGCCATCATGAAAACGAAATGCGCCCCAGGGA
TCCGATTCGTTGTCGCGAGTGTGGATATCGTATCATGTACAAAAAGCGCA
CCAAGCGTCTTGTTGTCTTTGATGCCCGTGCAAGCTTTCTAGACCAT
FMO13088.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 18:32:36
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Rpb12-RA | 353 | CG34186-RA | 80..250 | 9..179 | 855 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 18:32:35
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 15145179..15145273 | 159..65 | 475 | 100 | Minus |
| 2R | 25286936 | 2R | 15145383..15145440 | 66..9 | 290 | 100 | Minus |
Blast to na_te.dros performed 2014-11-28 18:32:35
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 297 | 6995 | 297 DMIS297 6995bp Derived from X03431 (g8146) (Rel. 36, Last updated, Version 2). | 2945..2982 | 82..45 | 100 | 73.7 | Minus |
FMO13088.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2013-01-30 10:18:10 Download gff for
FMO13088.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG34186-RA | 51..232 | 1..183 | 96 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:00:33 Download gff for
FMO13088.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Rpb12-RA | 72..253 | 1..183 | 96 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:04:38 Download gff for
FMO13088.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Rpb12-RA | 72..253 | 1..183 | 96 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 19:04:38 Download gff for
FMO13088.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 15145067..15145090 | 160..183 | 91 | <- | Minus |
| 2R | 15145179..15145271 | 67..159 | 100 | <- | Minus |
| 2R | 15145383..15145447 | 1..66 | 93 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:00:33 Download gff for
FMO13088.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 11032572..11032595 | 160..183 | 91 | <- | Minus |
| arm_2R | 11032684..11032776 | 67..159 | 100 | <- | Minus |
| arm_2R | 11032888..11032952 | 1..66 | 93 | | Minus |
