Clone FMO13090 Report

Search the DGRC for FMO13090

Clone and Library Details

Library:FMO
Tissue Source:D. melanogaster
Created by:Charles Yu
Date Registered:2006-03-07
Comments:BD Creator expression clones with C-terminus FLAG HA tag for tissue culture
Original Plate Number:130
Well:90
Vector:pMK33-CFH-BD
Associated Gene/TranscriptCG34132-RA
Protein status:
Sequenced Size:Not sequenced

Clone Sequence Records

FMO13090.5prime Sequence

278 bp (278 high quality bases) assembled on 2013-01-30

> FMO13090.5prime
CAGTCGACATGGCTATGGCTAATGTGGACAAAGGTGAACTTATGGACCAG
GTTAAGCAACAGATTGCTGTTGCGAATGCCCAGGAATTGCTCACGCAAAT
GACCGAAAAGTGCTTCAAAAAATGTGTCAATAAGCCGGGAACTTCCCTCG
ATTCGTCCGAACAGAAATGCATTTCCATGTGCATGGACCGGTTTATGGAC
TCGTGGAACCTCATTTCTCGGGTGTACGGCCAAAGAATACAACGTGAACA
ATCCAAGTTCGCAAGCTTTCTAGACCAT

FMO13090.5prime Blast Records

Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 18:32:49
Subject Length Description Subject Range Query Range Score Percent Strand
CG34132-RA 535 CG34132-RA 147..398 9..260 1260 100 Plus
Tim13-RA 442 CG11611-RA 106..289 25..208 260 76.8 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 18:32:47
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 7885649..7885804 9..164 780 100 Plus
2L 23513712 2L 7885875..7885972 163..260 490 100 Plus
3L 28110227 3L 11774213..11774396 208..25 260 76.1 Minus
Blast to na_te.dros performed on 2014-11-28 18:32:48 has no hits.

FMO13090.5prime Sim4 Records

Sim4 to dmel-all-transcript-r5.32.fasta performed 2013-01-30 10:18:12 Download gff for FMO13090.5prime
Subject Subject Range Query Range Percent Splice Strand
CG34132-RA 1..255 9..264 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:00:41 Download gff for FMO13090.5prime
Subject Subject Range Query Range Percent Splice Strand
CG34132-RA 140..401 1..264 97   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:04:46 Download gff for FMO13090.5prime
Subject Subject Range Query Range Percent Splice Strand
CG34132-RA 140..401 1..264 97   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 19:04:46 Download gff for FMO13090.5prime
Subject Subject Range Query Range Percent Splice Strand
2L 7885642..7885804 1..164 97 -> Plus
2L 7885877..7885975 165..264 98   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:00:41 Download gff for FMO13090.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_2L 7885642..7885804 1..164 97 -> Plus
arm_2L 7885877..7885975 165..264 98   Plus