FMO13091.5prime Sequence
662 bp (662 high quality bases) assembled on 2013-01-30
> FMO13091.5prime
CAGTCGACATGTTTTTAAACGATATAGGCCAGCCCTTAATACTGGAAAAA
GGAAAAGTCTACAGTTCCTACGAGGAGCACCGTGGACCCTTGCTCTTCAC
GTCAGCCGCCTTAGGAGATCTAATAGCACCACAAAATTGGTGCCAGTTAG
CTGTGGGTTCGCAGCTGGACATCTCACGGCTGCAATCACATGCAGATGTT
TCAGAAAGCTGCACTTTTGAAATACTACTGCCGAATAAGCCCACCCGACT
AGTGTACGATGAAAACGAGATCACAATCACATTGATACCAGCAGGAAGAA
AGGAAAACGGCTTGGAGTGCAACCTATTCTACATAGAAAACGGCCATGCA
CGATATTTAATTGTGGACTGCCTATCTGGGTATCTGGACTTTCTGCCAAA
GGCTTCGGGCTCCCTTCACACGGGCCTCTGTCAGGGAATCGATGTACTGT
ACGTGGACGAAGAGCTATTAGCTGAGAACCAAATAAACGAGGATCTTTAC
AGTTTGGTTGACCTGATAAGACCAAAGTTCATATACGGGTTGCGGCAGTG
GGAACTGCCGAAGTGGCTGCTCGATCTGCGTCAGATTGATGATAGAAATA
AGAAGTATAGCGTGCTTTCCGTACAAAATGATGCATTTAAGGTTGCAAGC
TTTCTAGACCAT
FMO13091.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 18:32:56
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG34008-RA | 715 | CG34008-RA | 23..658 | 9..644 | 3180 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 18:32:54
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 20580740..20581044 | 644..340 | 1525 | 100 | Minus |
| 3R | 32079331 | 3R | 20581113..20581376 | 339..76 | 1320 | 100 | Minus |
| 3R | 32079331 | 3R | 20581432..20581500 | 77..9 | 345 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 18:32:55 has no hits.
FMO13091.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2013-01-30 10:18:12 Download gff for
FMO13091.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG34008-RA | 23..661 | 9..648 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:00:44 Download gff for
FMO13091.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG34008-RA | 23..661 | 9..648 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:04:49 Download gff for
FMO13091.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG34008-RA | 23..661 | 9..648 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 19:04:49 Download gff for
FMO13091.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 20580736..20581044 | 340..648 | 99 | <- | Minus |
| 3R | 20581113..20581374 | 78..339 | 100 | <- | Minus |
| 3R | 20581432..20581500 | 9..77 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:00:44 Download gff for
FMO13091.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 16406458..16406766 | 340..648 | 99 | <- | Minus |
| arm_3R | 16406835..16407096 | 78..339 | 100 | <- | Minus |
| arm_3R | 16407154..16407222 | 9..77 | 100 | | Minus |
