FMO13094.5prime Sequence
809 bp (809 high quality bases) assembled on 2013-01-30
> FMO13094.5prime
CAGTCGACATGGATTTCAAGAAGCTGAAGAAAATGGAGGAGGTGGTGCGC
ATCGGCGGCAAAGGATCTATGCGCCGCAAGCATAAGAGATTCCCATCCTC
GGCTGCGGCCGAGAAGCGCGTGCAAGCCACATTGGCCATGTTGCCGTTGA
AGAATATCGACGAAATCGAGGAGGTGACCATCGAGTTCACCAATTCCAGT
AAGGTTGTGTTAACCATGCCCAGGGTTCAGAGCACCGCTGGCAATTCTTT
CTTCGTGGTTAGTGGCGATTTCGTGCGCAAGTCGTCAACAGCTGGCCCAT
CGAAAGTGGCCAAGGCAGCCAATGCGCCCAAGGCACCCATGCCACCTAAG
CCACCCAAGCCGGAAGCTTTTTCCGACAAAAAGCCAGAATCAGAGGAGTC
CATTAAGGTGGCCAAGAAGCCCAAGAAGCCGCGCAATCGTGTTCGTCCTC
GCAACAAGAAGGTCCAAATGATGCTCTCCAAAAACAAAGAGGACGCAGCC
ATGGCTGGCTGGGATTCGGAGCCGAAGCTTAGCAATGGTAAACCAATTTT
GATCTCCTCTGAAGATGGCAGCGATCCGGATAATGAGAAGGTGCCATCGG
ATGAGTCTGATGTGGATCGGACCATAGTCTGCGACAAAGATTCGCTGGGA
AGCTTCGGCGATGATTCCGACGGCAAGGAGGACGTTGACACTACGGAGTC
GATCTACCTGTCCTCCTACTCCAATTACTATTATTTGACGGAGCAGCTCT
ATCCAAATACTTATCGCGTTCAGGTCTCAGAGGACGAAGATGCAAGCTTT
CTAGACCAT
FMO13094.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 18:32:27
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| betaNACtes1-RA | 1084 | CG13402-RA | 101..883 | 9..791 | 3915 | 100 | Plus |
| betaNACtes3-RA | 967 | CG32601-RA | 118..903 | 9..791 | 2945 | 91.7 | Plus |
| betaNACtes6-RA | 967 | CG32598-RA | 118..903 | 9..791 | 2900 | 91.3 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 18:32:25
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 14171688..14172470 | 791..9 | 3915 | 100 | Minus |
| X | 23542271 | X | 14378977..14379762 | 9..791 | 2920 | 91.7 | Plus |
| X | 23542271 | X | 14316194..14316979 | 791..9 | 2875 | 91.3 | Minus |
| X | 23542271 | X | 14380865..14381352 | 310..791 | 1650 | 90.2 | Plus |
| X | 23542271 | X | 14314705..14315021 | 791..478 | 1130 | 91.2 | Minus |
| X | 23542271 | X | 14380507..14380860 | 9..359 | 955 | 85.3 | Plus |
| X | 23542271 | X | 14315096..14315412 | 322..9 | 830 | 84.9 | Minus |
| X | 23542271 | X | 15576746..15576921 | 499..676 | 355 | 82.1 | Plus |
| X | 23542271 | X | 14315018..14315117 | 424..328 | 255 | 86 | Minus |
Blast to na_te.dros performed on 2014-11-28 18:32:26 has no hits.
FMO13094.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2013-01-30 10:18:09 Download gff for
FMO13094.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG13402-RA | 101..888 | 9..797 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:00:28 Download gff for
FMO13094.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| betaNACtes1-RA | 101..888 | 9..797 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:04:32 Download gff for
FMO13094.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| betaNACtes1-RA | 101..888 | 9..797 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 19:04:32 Download gff for
FMO13094.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 14171683..14172470 | 9..797 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:00:28 Download gff for
FMO13094.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 14065716..14066503 | 9..797 | 99 | | Minus |
