FMO13104.5prime Sequence
287 bp (287 high quality bases) assembled on 2013-02-11
> FMO13104.5prime
CAGTCGACATGGTGCACTTTTTTGGATCGATTTTTCTGATGATGAGCAGT
ATCTTGATCGAATTTCTGGTGATCATCTATCTGGTAACAGATATAATCCA
CCTGATCTTTTGTAGCCCCTTTATAATCAATTATGCGTTAAGTTGTAGCT
TCTGCACTCTAGAATCGATTCCTGTATTCTTCACCCTAGCTTTTAGCCTT
TATTTTTGGATAGTGGCATTTTTCTACTGGCGACGCCTTCTCTGGGAACA
CAATCCCGAAAACGACGACGCAAGCTTTCTAGACCAT
FMO13104.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 18:37:52
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG34300-RB | 635 | CG34300-RB | 164..424 | 9..269 | 1305 | 100 | Plus |
| CG34300-RA | 631 | CG34300-RA | 157..420 | 9..269 | 1265 | 98.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 18:37:50
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 30306159..30306292 | 189..56 | 670 | 100 | Minus |
| 3R | 32079331 | 3R | 30306019..30306100 | 269..188 | 410 | 100 | Minus |
| 3R | 32079331 | 3R | 30306348..30306395 | 56..9 | 240 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 18:37:50 has no hits.
FMO13104.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2013-02-11 10:56:56 Download gff for
FMO13104.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG34300-RB | 156..430 | 1..275 | 97 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:02:52 Download gff for
FMO13104.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG34300-RB | 156..430 | 1..275 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:23:19 Download gff for
FMO13104.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG34300-RB | 156..430 | 1..275 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 19:23:19 Download gff for
FMO13104.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 30306348..30306403 | 1..56 | 92 | | Minus |
| 3R | 30306013..30306098 | 190..275 | 96 | <- | Minus |
| 3R | 30306159..30306291 | 57..189 | 100 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:02:52 Download gff for
FMO13104.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 26131735..26131820 | 190..275 | 96 | <- | Minus |
| arm_3R | 26131881..26132013 | 57..189 | 100 | <- | Minus |
| arm_3R | 26132070..26132125 | 1..56 | 92 | | Minus |
