FMO13106.5prime Sequence
1137 bp (1056 high quality bases) assembled on 2013-02-11
> FMO13106.5prime
CAGTCGACATGGATGACGATCAGCAGTTTTGTTTGCGGTGGAACAACCAC
CAGAGCACACTGATCAGCGTGTTCGACACGTTGCTGGAGAACGAGACTCT
AGTCGATTGCACGCTAGCCGCCGAGGGCAAATTTCTCAAGGCCCACAAGG
TGGTGCTGTCAGCATGCAGTCCCTACTTTGCTACCTTACTACAAGAACAG
TACGACAAACATCCCATCTTTATACTCAAGGATGTCAAGTACCAAGAGCT
GCGCGCCATGATGGACTACATGTACCGCGGCGAGGTCAATATCTCGCAGG
ATCAGCTGGCCGCTCTGCTCAAGGCCGCCGAATCGCTTCAGATCAAGGGC
CTTTCGGACAATCGCACTGGCGGCGGAGTAGCTCCCAAGCCAGAGTCCTC
CGGCCATCATCGCGGCGGTAAGCTGAGCGGTGCCTACACACTGGAGCAAA
CTAAGCGGGCTCGACTGGCCACCGGCGGAGCGATGGATACGTCTGGCGAT
GTGTCCGGTTCGCGCGAGGGCTCCTCGAGTCCGTCGCGTCGTCGCCGAAA
AGTCCGACGTCGCAGCATGGAGAATGATGCCCACGACAACTCAAACTCGT
CCGTGTTACAAGCCGCCGCCTCGAATCAGTCAATCCTCCAGCAGACAGGG
GCCGGTTTGGCCGTCTCCGCTTTGGTCACCACCCAGTTGTCCAGCGGACC
GGCAGCCGGAACCAGCAGCCAAGCGTCGTCGACCCAACAACAGCAGCCAT
TGACCAGCACCAACGTTACCAAAAAGACTGAAAGCGCTAAACTAACATCC
TCGACAGCCGCCCCAGCGAGCGGAGCATCTGCGTCAGCGGCTGTACACAG
GCCCATCTGCATCAGCAGCAGCGCAGACCACAAGCGATGCCATTAACACC
GAGAATGTACAAGCCCAGAGCCAAGTGGCGCCCAAGGCGTCCAAGGCGAT
GACGAGGACATTGATGAGGGTAGTGCCGTTGCGGACCAACTCGGCACCGG
ACCCAATCCCGCCTCCGCCTCTGCATCCGCCGTCCATGCGGAGTTGTGTA
AAGCAGCTGGGCCAGCGTTGTGGAACAAATTCGTCGTCGATTCACAAACA
TAAGATCAAGGACCACAGGCGGGTCATCCATGGCTCC
FMO13106.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 18:38:05
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| lola-RAA | 4623 | CG12052-RA | 607..1730 | 9..1128 | 5280 | 98.6 | Plus |
| lola-RZ | 2707 | CG12052-RZ | 403..1526 | 9..1128 | 5280 | 98.6 | Plus |
| lola-RB | 2974 | CG12052-RB | 397..1520 | 9..1128 | 5280 | 98.6 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 18:38:03
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 10532348..10532895 | 1118..576 | 2165 | 97.1 | Minus |
| 2R | 25286936 | 2R | 10533118..10533511 | 576..183 | 1970 | 100 | Minus |
| 2R | 25286936 | 2R | 10533576..10533749 | 182..9 | 870 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 18:38:04 has no hits.
FMO13106.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2013-02-11 10:56:58 Download gff for
FMO13106.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| lola-RV | 445..1572 | 1..1128 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:02:58 Download gff for
FMO13106.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| lola-RB | 393..1520 | 1..1128 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:23:26 Download gff for
FMO13106.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| lola-RB | 393..1520 | 1..1128 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 19:23:26 Download gff for
FMO13106.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 10532338..10532894 | 577..1127 | 96 | <- | Minus |
| 2R | 10533118..10533511 | 183..576 | 100 | <- | Minus |
| 2R | 10533576..10533753 | 1..182 | 97 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:02:58 Download gff for
FMO13106.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 6419843..6420399 | 577..1127 | 96 | <- | Minus |
| arm_2R | 6420623..6421016 | 183..576 | 100 | <- | Minus |
| arm_2R | 6421081..6421258 | 1..182 | 97 | | Minus |
