FMO13107.5prime Sequence
1161 bp (1058 high quality bases) assembled on 2013-02-11
> FMO13107.5prime
CAGTCGACATGTGGCCGCAAACGCTGGAAATGTCGCGGGACGAGTGCCGA
GGCATGCTGCGTCGACTGGAACTCGAGTCCTATTCACATGTGGTGAGCGT
TTTTCGCGCCCAAGGAGCCCTCAGTGAAACGAAGGCGAAACTGCTGGAGG
AGCTGCGCCAGCAGTTCCACATTAACCAGGAACGCCACAGGGCGGAAGTG
CGGAGGGCGGCCAACGACGAGCAGCTCTGCACCATTGCGGAAAACGTTTG
TGGGCCCAACACCTGGCAGGAATGGTCACGCGAGGGACGACGCCTCTATC
CTCTTCTTCCCAGGATTAGTCCACAAACTGCGCTGAGCATCGTTGCCAAT
GACCTGGCGGCCAAAGCCTGCGAGGAAAACGCCAAATTGGCTGCTCCGGC
CGAAACGGCGGTCCACTTTGGAGAAGCCCTCGTGGAGCAGGCCTCGCTGA
TGAGCCTGAAATATCCGCGTGGTGCCAGGATCCAGGACACCGCCATGGTG
ATCATGGCGGAGCCGTTCAAAGTTCCCGATCTACCCAATGAGGTGAAGAA
AATGACACAGAAGCGCAAGGAGAACGATAGCGGAATCGACGGCAAGCCGA
ACAAGAAGCGGCATATGCAGCAACCACATCCGCAGCAGCCGCATCTGCAG
GCTTCGCAGCAGCAGCAGCAGTCACAGCAGCTGAATCCGAACTCCTCGAA
TCCCGGCATGGAGGAGGCAGATCCCGTGCCGCCAGAGAAACGGATGACTG
CTCGGACGCTACAGCAGCGCTACTTCTACCAGCAGCAGATGAAGCACAAG
CAGCGACTGGCCAGCAAACGGAATCTTGCCAACAGACTGGGCTCACCCTC
CGCGCAATCGGGCAATCCCTTGGGCGGCAGGAATATGCCCAGCTCCGGTG
GAGACACTTCGACAGCTAAGCGAAGTGCCGCACCTGCCAGAGCGGCAGAC
GAGCGCAGAAGCAACTGCAGCAGCACAGAGTTGCAGCACACCAGCACAGA
AAGTATTATGCAGTCGCAGAGACGGTGCCCATCACATGGTGGTACAGCCG
CCACGTGGAGTATGGTGTTGATGGAGGCGCCTCAAAACGCTGGCGCATCA
TCTTCCACGCCCACGTCCCAGTCGCTCCTCTACAATCTAACGAACTAAGG
CCATGTCCGTG
FMO13107.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 18:38:11
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG15356-RA | 4294 | CG15356-RA | 137..1275 | 2..1130 | 5215 | 98.1 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 18:38:09
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 1978618..1979203 | 1095..515 | 2350 | 97.6 | Minus |
| 2L | 23513712 | 2L | 1979910..1980180 | 515..245 | 1355 | 100 | Minus |
| 2L | 23513712 | 2L | 1980253..1980428 | 244..69 | 865 | 99.4 | Minus |
| 2L | 23513712 | 2L | 1980552..1980619 | 69..2 | 310 | 97.1 | Minus |
Blast to na_te.dros performed on 2014-11-28 18:38:10 has no hits.
FMO13107.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2013-02-11 10:56:59 Download gff for
FMO13107.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG15356-RA | 136..1275 | 1..1130 | 97 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:03:04 Download gff for
FMO13107.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG15356-RA | 136..1275 | 1..1130 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:23:30 Download gff for
FMO13107.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG15356-RA | 136..1275 | 1..1130 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 19:23:30 Download gff for
FMO13107.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 1978578..1979202 | 516..1130 | 96 | <- | Minus |
| 2L | 1979910..1980180 | 245..515 | 100 | <- | Minus |
| 2L | 1980253..1980427 | 70..244 | 99 | <- | Minus |
| 2L | 1980552..1980619 | 1..69 | 95 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:03:04 Download gff for
FMO13107.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 1978578..1979202 | 516..1130 | 96 | <- | Minus |
| arm_2L | 1979910..1980180 | 245..515 | 100 | <- | Minus |
| arm_2L | 1980253..1980427 | 70..244 | 99 | <- | Minus |
| arm_2L | 1980552..1980619 | 1..69 | 95 | | Minus |
