FMO13109.5prime Sequence
1179 bp (1072 high quality bases) assembled on 2013-02-11
> FMO13109.5prime
CAGTCGACATGTGCACAATGCCAGCAACAAGAGATGCATCCGGCTCCGGC
GATGCATCAACTGACCTCATCGCAGCAAGGAGCCTCTCCAGCCACCAAGG
ACAGCGCTCCAACTTGCGCATATTTAAACTTTTGATTAGCTGCTGCCTCT
TAATGTTGTGCATTTACCCAAATGCCTGGCCCTGGTCCATCGGCCCCGGA
TCGGGACCCTTCTCTGTCTCGGCCGACAGCATCAAGGGCCGCGGCGATAC
TCACCGCCTGGGTGAGATGGGCACCTCCTTATCGTCATCCCTGCCGTCCT
CGTGGCTCACCCAGAGCAATAACCATGCAAATATATCCGAGTTACTGGAC
AATCTGCTGCGCGGCTATGACAATAGCATACGTCCGGATTTCGGTGGACC
TCCAGCCACTATTGAAGTGGATATAATGGTTCGCAGCATGGGCCCAATAT
CAGAGGTCGATATGACCTACTCGATGGACTGTTATTTCCGCCAATCCTGG
GTGGATAAACGTCTCGCATTCGAGGGCGCCCAGGACACGCTGGCACTGAG
CGTCTCGATGTTGGCACGGATTTGGAAGCCGGATACGTACTTTTACAACG
GCAAGCAGAGCTATTTGCACACGATTACCACGCCAAATAAGTTTGTGAGG
ATCTATCAGAACGGACGCGTGCTGTACTCCAGCCGGCTGACAATTAAAGC
CGGCTGCCCCATGAATCTGGCCGATTTTCCAATGGATATACAAAAGTGTC
CTCTGAAATTCGGTTCATTTGGCTACACAACGTCGGATGTCATCTACCGT
TGGAACAAAGAAAGACCACCCGTCGCCATTGCCGAGGACATGAAGCTGTC
CCAATTCGATTTGGTCGACTGTCCGGCTGGAAATTTAACGGACATTGTTT
ACAAGCGGCTGCTCCAAGACCACAACGTCGCCCATTCACACAAGGATCCA
CCACGACCCACCAGCAAGTAATGACCACTTTCGCCGGTCCCGCGCAAGAT
CAGCATGTCCGCGGCACGGGACTCAAGCTGGACAAGGAGCCTTCGGTACG
ACGGATGCAACTGGGTGCTCGGGTCGACCCCGTCTATGGACTATTTACCT
GAAACAAATCATCCGTCGAGTACTCATGGTTGATGTAAACTTCACTGACG
GTCCATGGCCATCTTCGGATCAGGTTAAC
FMO13109.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 18:38:20
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Grd-RA | 4071 | CG7446-RA | 921..2075 | 9..1143 | 5175 | 97.8 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 18:38:19
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 17829314..17829702 | 9..397 | 1945 | 100 | Plus |
| 3L | 28110227 | 3L | 17831558..17831862 | 464..768 | 1525 | 100 | Plus |
| 3L | 28110227 | 3L | 17837278..17837566 | 769..1049 | 1090 | 95.8 | Plus |
| 3L | 28110227 | 3L | 17831121..17831189 | 396..464 | 345 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 18:38:19 has no hits.
FMO13109.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2013-02-11 10:57:01 Download gff for
FMO13109.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Grd-RA | 357..1511 | 9..1143 | 97 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:03:11 Download gff for
FMO13109.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Grd-RA | 921..2075 | 9..1143 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:23:34 Download gff for
FMO13109.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Grd-RA | 921..2075 | 9..1143 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 19:23:34 Download gff for
FMO13109.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 17829314..17829701 | 9..396 | 100 | -> | Plus |
| 3L | 17831122..17831189 | 397..464 | 100 | -> | Plus |
| 3L | 17831559..17831862 | 465..768 | 100 | -> | Plus |
| 3L | 17837278..17837646 | 769..1122 | 93 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:03:11 Download gff for
FMO13109.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 17824659..17824962 | 465..768 | 100 | -> | Plus |
| arm_3L | 17830378..17830746 | 769..1122 | 93 | | Plus |
| arm_3L | 17822414..17822801 | 9..396 | 100 | -> | Plus |
| arm_3L | 17824222..17824289 | 397..464 | 100 | -> | Plus |
