FMO13115.5prime Sequence
1135 bp (1062 high quality bases) assembled on 2013-02-11
> FMO13115.5prime
CAGTCGACATGAATACCCAATCGAAGGTGTACCGTACCGGCGAAGAAATC
TATGACAACTTGCCATGCGATAGTTATTTCAACATGAATGCCATTCGCAA
CCTGGGAATCCCAACAACGTTTCCGACCATTGGAACATTTACACTTGACT
CTACTACGTTGGGACTGCAGCCGCAGGGTCAGGGCCCGTCGCCCCAGCAG
CAGCAGCATCAACAGCAACAACAACAGCAGCAGCAGCAACATCAGCAGAA
TATGCACCACCATCAACATCAGCAGCAACACATGCAGCAGCAGCAGCAAC
AACAACAACATCAGCAGCAACACCAACAGCAGCAACATCAACAACAACAG
CAACATCAGCAGCAGCAGCAGCAGCAACAACAGCATCCAACCATTGGAAT
GTTCGATGCCAACGAGGTTAACGATGTCATCCAGAATCCTCCTCAAATCG
GGGTATTCCAGTCTAACAGCGTTCTGACCAACGGTGCCGGCAGTGGCTCC
TCGATCTTTGGCTCCCAATCGAGCAATTCATCGGCGGCAGCTGCAGATCC
CAGCCAGACCACCCGGGAAACTGGCATCATTGAAAAGTTGTTGCATTCGT
ATGGATTCATTCAGTGCTGTGAGCGGCAGGCGCGTCTTTTCTTTCATTTC
TCGCAATTCAGCGGTAATATTGATCATTTGAAAATCGGAGATCCCGTGGA
GTTTGAGATGACCTATGATCGCCGCACCGGCAAGCCGATAGCTAGTCAAG
TATCAAAAATAGCCCCAGAGGTTGTTCTCTCCGAGGAGCGGGTCACCGGC
ACGGTGACCACCGAGCTGCGCACCGATAGCGCCAACAATGTGCTTAACTC
CAGCGAGACCACAGGTCGCATAAGCTATGAGAACCGAGGCGAATGCTTCT
TTTTACCCTATACCAAAGACGATGTGAAGGTAATGTCAACTTGCGCGCTG
GCGACAAGGTCAGCTTTCAAATCGCAACGAACCAAGGAGGTAATCTAGGC
GCCTGCCATATTCGCCTGGAAATCCGGCCCAGCGGTAGTATTCGTGGGGT
TGTCTGCTCGATGAGGATCGTTTGGCTTTAATCGAACGTGCCGATGTGGT
CAAGGAAATTTCCTCCACTCTCTAAGGCGTGAGCA
FMO13115.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 18:39:05
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Unr-RE | 8799 | CG7015-RE | 3477..4595 | 7..1119 | 5320 | 98.8 | Plus |
| Unr-RD | 4872 | CG7015-RD | 460..1578 | 7..1119 | 5320 | 98.8 | Plus |
| Unr-RC | 8844 | CG7015-RC | 3597..4715 | 7..1119 | 5320 | 98.8 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 18:39:03
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 8437508..8438057 | 593..44 | 2750 | 100 | Minus |
| 3L | 28110227 | 3L | 8437041..8437434 | 985..593 | 1920 | 99.7 | Minus |
| 3L | 28110227 | 3L | 8436845..8436973 | 1111..987 | 300 | 89.2 | Minus |
| 3L | 28110227 | 3L | 8438193..8438231 | 45..7 | 195 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 18:39:04 has no hits.
FMO13115.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2013-02-11 10:57:07 Download gff for
FMO13115.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Unr-RA | 449..1580 | 1..1126 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:03:36 Download gff for
FMO13115.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Unr-RA | 3530..4661 | 1..1126 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:23:57 Download gff for
FMO13115.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Unr-RC | 3590..4721 | 1..1126 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 19:23:57 Download gff for
FMO13115.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 8436830..8436972 | 988..1126 | 91 | <- | Minus |
| 3L | 8437039..8437433 | 594..987 | 99 | <- | Minus |
| 3L | 8437508..8438055 | 46..593 | 100 | <- | Minus |
| 3L | 8438193..8438238 | 1..45 | 93 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:03:36 Download gff for
FMO13115.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 8429930..8430072 | 988..1126 | 91 | <- | Minus |
| arm_3L | 8430139..8430533 | 594..987 | 99 | <- | Minus |
| arm_3L | 8430608..8431155 | 46..593 | 100 | <- | Minus |
| arm_3L | 8431293..8431338 | 1..45 | 93 | | Minus |
