FMO13116.5prime Sequence
1138 bp (1040 high quality bases) assembled on 2013-02-11
> FMO13116.5prime
CAGTCGACATGGCCGAAGAGTATATCCCAGATGCCAGCGTCATGGACACG
ATTGTCCCCGCCATCCTGGGACTGACTGCGGCTGCTGTCCTCTCGTCAGT
GGCCTGCATCTGCGCCCGGCAGATGCGCCTCCGGAACAAGAAACAGAGCC
AGCACGACGCCTCGTTCCCCTTCCAGCCGACCCGGCGACCGACCGCCGTT
CGATCGCCCAGCGGCCAGCCGCCGCACTACTTGAAGAAGTCGCCCTCGCC
GACGGGAGGCAAGCAGATGGGACTGCTGTCGCCGATGCAGGACCAGTCCA
CCTCCCCGATTGCGCAACCGAATGTCAAGTACAGCGAGGAGGGAGATGGA
CCCGCCCAGCATGCGGAGCAGCAGAATGGCAATCAACTGACCGTGGTGGA
TGGTAATGGGTTGAAGCACTCGCTGCACAACAGCCTTCACCACTCGCCGG
TAGAGACGATCGCCAACGGAAGTGTGACCATTACCCTGGACGACCATTCG
CTGACCAACGGGAAGGAGCTGACCGTGACCGACCAGTACGGCAAGCTGGG
TACCATCTATTTTAAGCTGCGCTACTTGGCCGAAAGGAACGCCCTTATGG
TGTCCATCATCCGTTGTCGCGGACTCCCCTGCAAGGGAGGATCGAGCGGA
ACCGGAGATATTCCCACTGGCATGAATGGACGCACTCAGGCGGCAACGGA
TCCGTATGTCAAGCTGCAGCTGCTGCCGGACAAGCAGCACAAGGTCAAGA
CCCGGGTGGTGCGAAATACCCGGAACCCGGTTTACGACGAGGACTTCACC
TTCTACGGCCTGAACATGAACGACCTGCAGAACATGTCGCTGCACTTTGT
CATCCTCAGCTTCGATCGATACTCACGTGACGACGTCATTGGCGAAGTGG
TGTGCCCATTGACCTCCATCGAGATCGGGGACATCTCCAAAGGGGCTTTG
TCCATCAGCAAAGAGATCCAGCCACGGAGCTTGAGATTCGAGCCCAGGGT
CGCGGGAGCTGCTCATCCTCCCTCTGCTGCCAACCAGCTGCGGTCGCCCC
CACCGTCGTCCTTGCTGATACCCGAACTTACGCGCATGGAATGTCACCCG
AACTGGTGGATCGAAGGTTAGAATATAATCTCCTCTCT
FMO13116.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 18:39:12
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Syt4-RA | 3103 | CG10047-RA | 182..1310 | 9..1136 | 5170 | 97.8 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 18:39:09
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 7267669..7268678 | 52..1060 | 4785 | 98.9 | Plus |
| 3R | 32079331 | 3R | 7266853..7266895 | 9..51 | 215 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 18:39:11 has no hits.
FMO13116.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2013-02-11 10:57:09 Download gff for
FMO13116.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Syt4-RA | 178..1254 | 1..1076 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:03:39 Download gff for
FMO13116.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Syt4-RA | 174..1250 | 1..1076 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:24:01 Download gff for
FMO13116.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Syt4-RA | 174..1250 | 1..1076 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 19:24:01 Download gff for
FMO13116.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 7266845..7266895 | 1..51 | 92 | -> | Plus |
| 3R | 7267669..7268659 | 52..1041 | 99 | == | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:03:39 Download gff for
FMO13116.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 3092567..3092617 | 1..51 | 92 | -> | Plus |
| arm_3R | 3093391..3094381 | 52..1041 | 99 | == | Plus |
