FMO13117.5prime Sequence
1149 bp (1058 high quality bases) assembled on 2013-02-11
> FMO13117.5prime
CAGTCGACATGGAGGTGGAAAGCCCGGAACACACGCGCGACTTCGCCGAG
GTAGACATCAATAACGGTGCGGCCACAGGATCGGAAGACGAGGAGGAGGA
GGTGCCAGCGCCCGGCAGCGTAACTCTGGATCGCAACGAAAGTGATCTCT
TCGTGTCGGCCTTGAGTCCCAGCAGCATCGGGGATATACACCCGCTGCAG
GAAGTGCTCACCGACGACGGCGACTACTTCATCAGCATCGTGGTCTCGGA
TCCGCAGAAAATCGGCGATGGCATGGGCTCCTATTTGGCCTACAAGGTAA
CGACCAAAACGAACATTCCCAAATTCAAGCGTAGCGAGTTCAGTACTCTG
CGCCGCTTCAGCGATTTCCTTGGCATCCATGATCTGCTTGTGGGCAAGTA
CATGCGGCTGGGCCGCATCATACCGCCGGCGCCCTCCAAGAACATCATAG
GCAGCACCAAGGTGAAGATTAGCCCGCAGCAAAGCGAACCGGGCACGCCC
ATGACCCAGGAATGGGTGGAGATCCGCCGGGCGGCCCTCGAGCGATTCGT
CCACCGTACCGCCCAGCATCCGGTGCTGCGCGTCGATCTGGATTTCATGA
ACTTCCTGGAGAGCGACCAGGAGCTGCCGCGTTCAGTGAATACCTCTGCG
CTCAGTGGAGCCGGCGTCATCCGCCTGTTTAACAAAGTTGGCGAAACTGT
GAACAAGATTACCTACAAAATGGACGAGAACGATCCGTGGTTCGACGACA
AGATCACCGAGGTGGAGAGCCTGCACGCCAATCTGCAGAAGCTGCACAAT
GCCATGAAATCGCTGGTCACGTCGCGTCGTGAGCTGTCGCTGCTCACCGG
CTTGTGGCCAAGTCGGCGGCCATGCTGAGCACTTGCGAGGAGCACACAGG
CCTCTCCAGAGCGCTGTCCAACCTGCGGACGTGAGGAGAGATAGAGCTAC
TGCGCTCCGAGCAGCCATTCGGACTTCTCATTCTGGCCGAGTTATCAAGG
ATTACCTGGGCTGTTTGCCGCCATCAAGTGCATTTTCATGAACCGCGTCA
AGCTTTCCAGAACTGCAGTACCCACAATTTCAGTTGTCAAGCGGCCGTTA
GACCTGGAACGCTCCAGCCTAGCATATGCCGACAAAGCTGATCCAGGCC
FMO13117.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 18:39:18
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Snx1-RB | 2022 | CG2774-RB | 113..1211 | 9..1095 | 5060 | 98.2 | Plus |
| Snx1-RA | 2028 | CG2774-RA | 113..1211 | 9..1095 | 5060 | 98.2 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 18:39:16
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 3450358..3451161 | 296..1088 | 3325 | 97.1 | Plus |
| 2L | 23513712 | 2L | 3449795..3449977 | 9..191 | 915 | 100 | Plus |
| 2L | 23513712 | 2L | 3450185..3450289 | 192..296 | 525 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 18:39:17 has no hits.
FMO13117.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2013-02-11 10:57:10 Download gff for
FMO13117.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG2774-RA | 110..1214 | 9..1102 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:03:44 Download gff for
FMO13117.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Snx1-RA | 113..1217 | 9..1102 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:24:05 Download gff for
FMO13117.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Snx1-RA | 113..1217 | 9..1102 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 19:24:05 Download gff for
FMO13117.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 3450358..3451175 | 296..1102 | 97 | | Plus |
| 2L | 3449795..3449977 | 9..191 | 100 | -> | Plus |
| 2L | 3450185..3450288 | 192..295 | 100 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:03:44 Download gff for
FMO13117.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 3449795..3449977 | 9..191 | 100 | -> | Plus |
| arm_2L | 3450185..3450288 | 192..295 | 100 | -> | Plus |
| arm_2L | 3450358..3451175 | 296..1102 | 97 | | Plus |
