FMO13119.5prime Sequence
1153 bp (1068 high quality bases) assembled on 2013-02-11
> FMO13119.5prime
CAGTCGACATGTCGCGGTCGACGTCAAAAACGACGTCGCTGCTTTGCGGC
AGCATCATCATTTTCTTCGTCACCATCTGCGGCTGCTTGGCACAAGATAC
TTCCAGCTACTACTTCCCATCGCAAAATCGATTTGTGCCATCATCCGGTT
CCTTTCCGCGCCCACAGCCGTCCTCGCTGAGTGGATTCCGTGCCAGTTCC
GGCGGATTCTCACCTTCGCCGGGCTCCTACCAGGAACAGCTTCTGTTCAT
CGCCAACGAAAATGCCAAACAATCGCCAGCGGCGGCCAGTTCGCAATTCG
GAACTCCATTTGGAGGCAGTTCCCAGTTTGCGAAACCCAATCGCCAGACG
GACTATTACGATATCTCGCCACGCCCCTTTGGAGTGCCCTCGGGGGCGGG
ACCAGCGGCATCGGCGGGATTAGGAGCGGCAGCGTCCACTGGTGCCACGT
CCGCGTCGGTGACCAATGGCTTCACACGCTCCAAGGCGATACGGAATGGA
TCGGGCAACAGCCTTGGTGGTGGATTCCAGCCGCAGACGCAGCGCATCAA
TGTGCCCCACCAGCAGACGCAGTTTTTGGCCCACTTTAGCGAATCTGGGA
ACGAAAAGCGACCGGTGACCAGCAGCCGTCCATTTGGCAATGGAGGATTC
TCACCTACCCGAACTCGAACCCAGGCGCCGGTTTCGGCACTTGTAGAAAA
TCCAGCCACTCCCGCAGCAACGGCTTTCAGACCACGTAATCGCTATCAAC
CCGGCAGCTCCACTGCATCTACCACAACCACAACAACGAGTAGTGCGGAG
GTGAGCAGCAAGCGGTACAACCGATTTGGTAGCAATCGGGCCAAAGCCAC
CAGCACCACCACCTCAACCACTCAGAACACACCCTCGGAACGCCCGAGTT
TCGGCAGGAAGTCACCAAATCCCAGGCGACCCGTTTTCATCAGTCGCGAG
TCAACGAACCGGTGAGTGTGGTCAGCAGCGACCATTCACTACAGTGGAGC
CAGGCTAAAGCTGCCAGCCAGACCCACCGCCTCGCACCACCAGCACTACC
GAAGCGTCGAGGAGGAGGAGTCCCTGGATGACTAGGAGAGAGGAGAGCCC
GAGGCATGATGACCGTATGGAAGGAATCGACAGGAACCGAGAAACTCGGA
TCT
FMO13119.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 18:39:24
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG10936-RA | 5377 | CG10936-RA | 401..1557 | 9..1150 | 5300 | 98.1 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 18:39:22
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 17609095..17609587 | 1088..599 | 2190 | 98.6 | Minus |
| 2R | 25286936 | 2R | 17611315..17611582 | 599..332 | 1340 | 100 | Minus |
| 2R | 25286936 | 2R | 17614900..17615137 | 332..95 | 1190 | 100 | Minus |
| 2R | 25286936 | 2R | 17637224..17637311 | 96..9 | 440 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 18:39:23 has no hits.
FMO13119.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2013-02-11 10:57:11 Download gff for
FMO13119.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG10936-RB | 394..1495 | 9..1104 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:03:48 Download gff for
FMO13119.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG10936-RA | 401..1502 | 9..1104 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:24:09 Download gff for
FMO13119.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG10936-RA | 401..1502 | 9..1104 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 19:24:09 Download gff for
FMO13119.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 17614900..17615135 | 97..332 | 100 | <- | Minus |
| 2R | 17637224..17637311 | 9..96 | 100 | | Minus |
| 2R | 17609101..17609586 | 600..1082 | 98 | <- | Minus |
| 2R | 17611315..17611581 | 333..599 | 100 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:03:48 Download gff for
FMO13119.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 13524729..13524816 | 9..96 | 100 | | Minus |
| arm_2R | 13498820..13499086 | 333..599 | 100 | <- | Minus |
| arm_2R | 13496606..13497091 | 600..1082 | 98 | <- | Minus |
| arm_2R | 13502405..13502640 | 97..332 | 100 | <- | Minus |
