FMO13120.5prime Sequence
1180 bp (1049 high quality bases) assembled on 2013-02-11
> FMO13120.5prime
CAGTCGACATGTCTATACAAAGCACAAGACATTCGCCATTCGCATGGACC
GCAAGAGCCCTGCTGCTGCTGGCCACCTGGTGCTGCTACCTCGGATATCT
GGGATCGGAGGCCCATGTGGCCCTCACCTATCCACCTGCCCGCAAATTCG
ACCTGGACTTTTTGGACAATGCGCGAACGAAGGCGCCATGTGGCATGCCC
AAAGGCTCCATCCGCACATCGCTGCTCTCCGGCACGCAGTTCAACGTCAC
CTGGCATTTGGCCTATGCGCACAAGGGCGGTTTTCGTTTGCAACTTTTGG
ATGCCCTCGATCGACCTGTACTGGACCTAACGCCACATGTAAATAACTCG
GAGTTTGTGAGCACTGATGTCACAGCCCAGTCTTATCAAGTGAAGATTCC
GAACGACTTTGAATGCTATAACTGCACTCTGCGTCTGCTTCGCCAGGCAG
ATGAATGGACCACCAGCTATCGCTTCTGGTCCTGCGCCGATGTAGACATC
AAGCTCCGAAAGGACTTCAAGGAGACCTGTTCAGGCAATGGCAAATACTT
CCCCTCGCGGTGCAAGTGCGACAAGAACTTCTATGGCCCGCAGTGCCAGT
ACAAGGATGAGTGCTCTGCCGACTCCGATTGCGGCGTCCAGGGCAAGTGC
GTGGAACTGGGTGGAACCTCGCTGCCTAAGAAACAATGCTACTGCAACTT
TGGATGGTTCGGTATTGGATGCAACAAACGGTCGCCCTACAAGAGCACAA
GCCTCGACCTCTCCTCTTATTCCAAAAAGGAGCTCTCACCTGACTACCAC
GTCTACTGGAGGCTGCTTGAAGAACAGAATGAGATTGAGATGGTACTTAA
GGTCAATGGTACATCTTGGGTCGGCCTGGCTGGAGACCACGTGGCATGAC
ACCGGAGTGCAAGAACTTCCCGCTGATACGGGACATCGGAGATCTGACCA
CAACACTGGAAGCCTCTGTTCCGGAACCCAAGAGTGAACCGGAGCCCAGA
GCGAACCGGAACCCAGAGCGAACCGGAACCCAAGAGTGATCCGGACCAAG
AAGTGAACCCGAAACCAAAAAGCGACTGAACCTAGAAGCCGAACCGAAAC
TAGAGCGAACCTTGACCGAAAAGTGAACCGGGCTAGAGTGAATCCGAACC
AAGAGTGACGGGAGCCCAGAAAGTGAACCG
FMO13120.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 18:39:29
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| nahoda-RC | 5866 | CG12781-RC | 898..2079 | 9..1180 | 5320 | 97.5 | Plus |
| nahoda-RB | 5067 | CG12781-RB | 430..1611 | 9..1180 | 5320 | 97.5 | Plus |
| nahoda-RA | 5535 | CG12781-RA | 898..2079 | 9..1180 | 5320 | 97.5 | Plus |
| nahoda-RC | 5866 | CG12781-RC | 2239..2330 | 971..1059 | 265 | 88 | Plus |
| nahoda-RB | 5067 | CG12781-RB | 1771..1862 | 971..1059 | 265 | 88 | Plus |
| nahoda-RC | 5866 | CG12781-RC | 2227..2323 | 977..1070 | 255 | 86.7 | Plus |
| nahoda-RB | 5067 | CG12781-RB | 1759..1855 | 977..1070 | 255 | 86.7 | Plus |
| nahoda-RC | 5866 | CG12781-RC | 2044..2141 | 974..1068 | 245 | 85.9 | Plus |
| nahoda-RC | 5866 | CG12781-RC | 2059..2150 | 971..1059 | 245 | 87.1 | Plus |
| nahoda-RC | 5866 | CG12781-RC | 2077..2153 | 971..1045 | 245 | 89.6 | Plus |
| nahoda-RB | 5067 | CG12781-RB | 1576..1673 | 974..1068 | 245 | 85.9 | Plus |
| nahoda-RB | 5067 | CG12781-RB | 1591..1682 | 971..1059 | 245 | 87.1 | Plus |
| nahoda-RB | 5067 | CG12781-RB | 1609..1685 | 971..1045 | 245 | 89.6 | Plus |
| nahoda-RC | 5866 | CG12781-RC | 2023..2123 | 971..1068 | 235 | 85.3 | Plus |
| nahoda-RB | 5067 | CG12781-RB | 1555..1655 | 971..1068 | 235 | 85.3 | Plus |
| nahoda-RC | 5866 | CG12781-RC | 2008..2096 | 974..1059 | 230 | 86.7 | Plus |
| nahoda-RB | 5067 | CG12781-RB | 1540..1628 | 974..1059 | 230 | 86.7 | Plus |
| nahoda-RC | 5866 | CG12781-RC | 2263..2357 | 977..1068 | 215 | 84.4 | Plus |
| nahoda-RC | 5866 | CG12781-RC | 2275..2351 | 971..1045 | 215 | 87 | Plus |
| nahoda-RB | 5067 | CG12781-RB | 1795..1889 | 977..1068 | 215 | 84.4 | Plus |
| nahoda-RB | 5067 | CG12781-RB | 1807..1883 | 971..1045 | 215 | 87 | Plus |
| nahoda-RC | 5866 | CG12781-RC | 1954..2051 | 974..1068 | 205 | 83.8 | Plus |
| nahoda-RB | 5067 | CG12781-RB | 1486..1583 | 974..1068 | 205 | 83.8 | Plus |
| nahoda-RC | 5866 | CG12781-RC | 1897..2114 | 971..1179 | 195 | 77 | Plus |
| nahoda-RB | 5067 | CG12781-RB | 1429..1646 | 971..1179 | 195 | 77 | Plus |
| nahoda-RC | 5866 | CG12781-RC | 1915..1991 | 971..1045 | 185 | 84.4 | Plus |
| nahoda-RC | 5866 | CG12781-RC | 1987..2078 | 971..1059 | 185 | 82.8 | Plus |
| nahoda-RC | 5866 | CG12781-RC | 2311..2366 | 971..1024 | 185 | 91.1 | Plus |
| nahoda-RB | 5067 | CG12781-RB | 1447..1523 | 971..1045 | 185 | 84.4 | Plus |
| nahoda-RB | 5067 | CG12781-RB | 1519..1610 | 971..1059 | 185 | 82.8 | Plus |
| nahoda-RB | 5067 | CG12781-RB | 1843..1898 | 971..1024 | 185 | 91.1 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 18:39:27
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 22910976..22911739 | 374..1131 | 3220 | 96.9 | Plus |
| 2R | 25286936 | 2R | 22904278..22904474 | 9..205 | 985 | 100 | Plus |
| 2R | 25286936 | 2R | 22910820..22910919 | 274..373 | 500 | 100 | Plus |
| 2R | 25286936 | 2R | 22910511..22910584 | 203..276 | 370 | 100 | Plus |
| 2R | 25286936 | 2R | 22911790..22911866 | 971..1045 | 195 | 89.6 | Plus |
| 2R | 25286936 | 2R | 22911952..22912028 | 971..1045 | 195 | 89.6 | Plus |
Blast to na_te.dros performed on 2014-11-28 18:39:28 has no hits.
FMO13120.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2013-02-11 10:57:12 Download gff for
FMO13120.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| nahoda-RA | 899..2069 | 9..1168 | 97 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:03:53 Download gff for
FMO13120.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| nahoda-RA | 898..2068 | 9..1168 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:24:12 Download gff for
FMO13120.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| nahoda-RA | 898..2068 | 9..1168 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 19:24:12 Download gff for
FMO13120.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 22910822..22910919 | 276..373 | 100 | -> | Plus |
| 2R | 22904278..22904473 | 9..204 | 100 | -> | Plus |
| 2R | 22910513..22910583 | 205..275 | 100 | -> | Plus |
| 2R | 22910976..22911781 | 374..1168 | 96 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:03:53 Download gff for
FMO13120.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 18798345..18798442 | 276..373 | 100 | -> | Plus |
| arm_2R | 18791801..18791996 | 9..204 | 100 | -> | Plus |
| arm_2R | 18798036..18798106 | 205..275 | 100 | -> | Plus |
| arm_2R | 18798499..18799304 | 374..1168 | 96 | | Plus |
