FMO13122.5prime Sequence
1183 bp (1074 high quality bases) assembled on 2013-02-11
> FMO13122.5prime
CAGTCGACATGCATGTTGAACAAACACGAATAAATATGCAGTCTCAAGGA
CAGAGCCATCAACTGCCGTCCGCGGCCCATATATTATTAGATCAAAATCC
GAATTCAACAGGCAGTAACCTAGTCGTAAAACAAAATGACATTCAATCTC
TTTCATCAGTCGGTTTACTCGAGTTGGCCCATAGAGAATACCAAGCTGTT
GACTATGAAAGCGCGGAAAAGCATTGCATGCAATTATGGCGTCAAGACAG
TACAAATACTGGAGTTTTGTTGTTGCTGTCATCTATTCACTTTCAGTGCA
GACGTCTTGATAAGTCAGCGCAATTCTCAACATTGGCAATAAAACAAAAC
CCTGTGCTGGCAGAAGCTTATAGTAATTTAGGAAATGTTTTTAAAGAGCG
TGGACAGTTACAAGAAGCTTTAGACAACTATCGCAGAGCTGTACGTCTAA
AACCAGATTTTATTGATGGATACATTAATTTGGCTGCTGCATTAGTTGCT
GCTCGTGACATGGAGTCTGCCGTTCAAGCTTATATTACAGCGTTACAATA
TAATCCTGATCTGTATTGTGTGCGCAGCGATCTGGGAAATCTTCTTAAGG
CTCTCGGTCGTTTGGAAGAAGCCAAGGCTTGTTACCTAAAGGCAATTGAA
ACATGTCCTGGCTTTGCAGTTGCATGGAGTAACCTAGGATGTGTGTTTAA
CGCTCAGGGAGAAATTTGGTTGGCTATACATCACTTTGAAAAAGCTGTGA
CTCTTGATCCCAATTTTTTGGATGCATACATAAATTTGGGAAACGTTCTT
AAGGAGGCACGAATATTTGATAGAGCTGTGGCCGCCTATTTACGTGCATT
AAATCTATCTCCGAATAATGCTGTAGTTCATGGCAATTTGGCATGCGTTT
ACTATGAACAAGTCTTATTGATTTAGCTATCGATACATATAGGAGGCATA
GAACTGCACCAAATTTCCCCGATGCGTACTGCAACCTTGCAAACGCTCTC
AAAGAAAGGGGCAGTTAAAGAGCTGAGACTGCTATAACACCTGCACCTAG
ACTTTGTTCAAATCATGCAGATTCCTAATATTAGCTAACTAAGAAGAGAG
CCAGGCTATATTGAAAGCTACCGACTTATTAAGCTTGGGAGTTCCGAATT
GCTGCTGTCCATTCAATTGGCCATCTGTTTGCA
FMO13122.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 18:38:31
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
sxc-RB | 3498 | CG10392-RB | 92..1289 | 9..1180 | 5150 | 96.4 | Plus |
sxc-RA | 3557 | CG10392-RA | 151..1348 | 9..1180 | 5150 | 96.4 | Plus |
sxc-RC | 3678 | CG10392-RC | 212..1409 | 9..1180 | 5150 | 96.4 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 18:38:29
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 5316268..5316479 | 162..373 | 1060 | 100 | Plus |
2R | 25286936 | 2R | 5320417..5320615 | 625..823 | 995 | 100 | Plus |
2R | 25286936 | 2R | 5320005..5320192 | 371..558 | 940 | 100 | Plus |
2R | 25286936 | 2R | 5307499..5307654 | 9..164 | 780 | 100 | Plus |
2R | 25286936 | 2R | 5325801..5325995 | 821..1011 | 765 | 96.4 | Plus |
2R | 25286936 | 2R | 5320248..5320317 | 558..627 | 350 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 18:38:30 has no hits.
FMO13122.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2013-02-11 10:57:03 Download gff for
FMO13122.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
sxc-RC | 193..1288 | 9..1092 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:03:16 Download gff for
FMO13122.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
sxc-RC | 212..1307 | 9..1092 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:23:39 Download gff for
FMO13122.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
sxc-RC | 212..1307 | 9..1092 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 19:23:39 Download gff for
FMO13122.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 5325804..5325999 | 824..1013 | 96 | -> | Plus |
2R | 5307499..5307652 | 9..162 | 100 | -> | Plus |
2R | 5316269..5316479 | 163..373 | 100 | -> | Plus |
2R | 5320008..5320191 | 374..557 | 100 | -> | Plus |
2R | 5320248..5320316 | 558..626 | 100 | -> | Plus |
2R | 5320419..5320615 | 627..823 | 100 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:03:16 Download gff for
FMO13122.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 1195004..1195157 | 9..162 | 100 | -> | Plus |
arm_2R | 1203774..1203984 | 163..373 | 100 | -> | Plus |
arm_2R | 1207513..1207696 | 374..557 | 100 | -> | Plus |
arm_2R | 1207753..1207821 | 558..626 | 100 | -> | Plus |
arm_2R | 1207924..1208120 | 627..823 | 100 | -> | Plus |
arm_2R | 1213309..1213504 | 824..1013 | 96 | -> | Plus |