Clone FMO13122 Report

Search the DGRC for FMO13122

Clone and Library Details

Library:FMO
Tissue Source:D. melanogaster
Created by:Charles Yu
Date Registered:2006-03-07
Comments:BD Creator expression clones with C-terminus FLAG HA tag for tissue culture
Original Plate Number:131
Well:22
Vector:pMK33-CFH-BD
Associated Gene/Transcriptsxc-RA
Protein status:
Sequenced Size:Not sequenced

Clone Sequence Records

FMO13122.5prime Sequence

1183 bp (1074 high quality bases) assembled on 2013-02-11

> FMO13122.5prime
CAGTCGACATGCATGTTGAACAAACACGAATAAATATGCAGTCTCAAGGA
CAGAGCCATCAACTGCCGTCCGCGGCCCATATATTATTAGATCAAAATCC
GAATTCAACAGGCAGTAACCTAGTCGTAAAACAAAATGACATTCAATCTC
TTTCATCAGTCGGTTTACTCGAGTTGGCCCATAGAGAATACCAAGCTGTT
GACTATGAAAGCGCGGAAAAGCATTGCATGCAATTATGGCGTCAAGACAG
TACAAATACTGGAGTTTTGTTGTTGCTGTCATCTATTCACTTTCAGTGCA
GACGTCTTGATAAGTCAGCGCAATTCTCAACATTGGCAATAAAACAAAAC
CCTGTGCTGGCAGAAGCTTATAGTAATTTAGGAAATGTTTTTAAAGAGCG
TGGACAGTTACAAGAAGCTTTAGACAACTATCGCAGAGCTGTACGTCTAA
AACCAGATTTTATTGATGGATACATTAATTTGGCTGCTGCATTAGTTGCT
GCTCGTGACATGGAGTCTGCCGTTCAAGCTTATATTACAGCGTTACAATA
TAATCCTGATCTGTATTGTGTGCGCAGCGATCTGGGAAATCTTCTTAAGG
CTCTCGGTCGTTTGGAAGAAGCCAAGGCTTGTTACCTAAAGGCAATTGAA
ACATGTCCTGGCTTTGCAGTTGCATGGAGTAACCTAGGATGTGTGTTTAA
CGCTCAGGGAGAAATTTGGTTGGCTATACATCACTTTGAAAAAGCTGTGA
CTCTTGATCCCAATTTTTTGGATGCATACATAAATTTGGGAAACGTTCTT
AAGGAGGCACGAATATTTGATAGAGCTGTGGCCGCCTATTTACGTGCATT
AAATCTATCTCCGAATAATGCTGTAGTTCATGGCAATTTGGCATGCGTTT
ACTATGAACAAGTCTTATTGATTTAGCTATCGATACATATAGGAGGCATA
GAACTGCACCAAATTTCCCCGATGCGTACTGCAACCTTGCAAACGCTCTC
AAAGAAAGGGGCAGTTAAAGAGCTGAGACTGCTATAACACCTGCACCTAG
ACTTTGTTCAAATCATGCAGATTCCTAATATTAGCTAACTAAGAAGAGAG
CCAGGCTATATTGAAAGCTACCGACTTATTAAGCTTGGGAGTTCCGAATT
GCTGCTGTCCATTCAATTGGCCATCTGTTTGCA

FMO13122.5prime Blast Records

Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 18:38:31
Subject Length Description Subject Range Query Range Score Percent Strand
sxc-RB 3498 CG10392-RB 92..1289 9..1180 5150 96.4 Plus
sxc-RA 3557 CG10392-RA 151..1348 9..1180 5150 96.4 Plus
sxc-RC 3678 CG10392-RC 212..1409 9..1180 5150 96.4 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 18:38:29
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 5316268..5316479 162..373 1060 100 Plus
2R 25286936 2R 5320417..5320615 625..823 995 100 Plus
2R 25286936 2R 5320005..5320192 371..558 940 100 Plus
2R 25286936 2R 5307499..5307654 9..164 780 100 Plus
2R 25286936 2R 5325801..5325995 821..1011 765 96.4 Plus
2R 25286936 2R 5320248..5320317 558..627 350 100 Plus
Blast to na_te.dros performed on 2014-11-28 18:38:30 has no hits.

FMO13122.5prime Sim4 Records

Sim4 to dmel-all-transcript-r5.32.fasta performed 2013-02-11 10:57:03 Download gff for FMO13122.5prime
Subject Subject Range Query Range Percent Splice Strand
sxc-RC 193..1288 9..1092 98   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:03:16 Download gff for FMO13122.5prime
Subject Subject Range Query Range Percent Splice Strand
sxc-RC 212..1307 9..1092 98   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:23:39 Download gff for FMO13122.5prime
Subject Subject Range Query Range Percent Splice Strand
sxc-RC 212..1307 9..1092 98   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 19:23:39 Download gff for FMO13122.5prime
Subject Subject Range Query Range Percent Splice Strand
2R 5325804..5325999 824..1013 96 -> Plus
2R 5307499..5307652 9..162 100 -> Plus
2R 5316269..5316479 163..373 100 -> Plus
2R 5320008..5320191 374..557 100 -> Plus
2R 5320248..5320316 558..626 100 -> Plus
2R 5320419..5320615 627..823 100 -> Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:03:16 Download gff for FMO13122.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_2R 1195004..1195157 9..162 100 -> Plus
arm_2R 1203774..1203984 163..373 100 -> Plus
arm_2R 1207513..1207696 374..557 100 -> Plus
arm_2R 1207753..1207821 558..626 100 -> Plus
arm_2R 1207924..1208120 627..823 100 -> Plus
arm_2R 1213309..1213504 824..1013 96 -> Plus