FMO13123.5prime Sequence
1185 bp (1072 high quality bases) assembled on 2013-02-11
> FMO13123.5prime
CAGTCGACATGTCTGAAGCGGAGCTGGAACAGACACCCAGCGCGGGCCAC
GTGCAGGAGCAGCCGATTGAGGAGGAGCATGAGCCGGAACAGGAGCCAAC
CGATGCGTACACAATTGGCGGTCCGCCGAGGACGCCGGTTGAAGATGCGG
CGGCCGAATTGAGCGCCAGTCTAGACGTCAGCGGCTCGGATCAGTCGGCG
GAGCAGTCGCTCGACCTCAGCGGTGTCCAAGCGGAGGCCGCGGCGGAGTC
AGAGCCACCGGCGAAGCGCCAGCATCGCGACATCAGTCCCATTTCGGAGG
ACAGCACGCCGGCGAGCAGCACATCGACTAGTTCCACCAGGTCGTCCAGC
TCCTCCCGCTACGACGATGTTAGCGAGGCGGAGGAGGCACCACCGGAGCC
CGAGCCGGAGCAACCACAGCAGCAGCAGCAGGAGGAAAAGAAGGAGGACG
GTCAGGATCAGGTGAAGTCACCAGGTCCAGTTGAATTGGAGGCACAGGAG
CCCGCGCAGCCGCAGAAGCAGAAAGAGGTGGTGGACCAGGAAATTGAAAC
CGAGGATGAGCCCTCCTCCGATACGGTAATCTGCGTGGCCGACATCAACC
CCTACGGCAGTGGTTCCAACATTGACGACTTCGTTATGGATCCCGATGCT
CCTCCCAATGCAATAATCACCGAGGTGGTTACCATTCCAGCTCCTCTTCA
TCTCAAAGGGACACAACAACTGGGGCTGCCATTGGCTGCCCCACCGCCAC
CACCACCTCCTCCAGCAGCGGAACAAGTCCCCGAGACTCCCGCCTCGCCC
ACAGATGACGGCGAGGAACCACCAGCAGTATATTTATCCCCCTACATACG
CTCTCGCTACATGCAGGAATCGACACCTGGCCTGCCCACCCGCCTGGCGC
CGCGTGATCCTCGCCAGCGCAACATGCCGCGCCAGCCGTAGTTCTGCCCA
TTCAAACCGTACTTAGCGCCAACGTTGAGCCATTTCTGACGACAGCAGCG
AAACTAGCAGCAGCGATGACGATGAGAGAAGAGAGACGAGATGATGCCTT
GACCATGGAGCACGACAAACACTTCAGGAGACGTCATCCAACAGTGACCC
TCTGATGCAAAGAATCGAATAAGCGAATCCGCACAGGATCTTATTTTATT
CCCGCCGCGAGAAAATGGCACACCGGGGTGCCACC
FMO13123.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 18:38:40
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| mof-RA | 3014 | CG3025-RA | 102..1257 | 9..1151 | 5300 | 98.1 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 18:38:37
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 5875686..5876752 | 1068..9 | 5020 | 98.7 | Minus |
Blast to na_te.dros performed 2014-11-28 18:38:38
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6723..6861 | 382..526 | 170 | 60.7 | Plus |
| roo | 9092 | roo DM_ROO 9092bp | 1049..1144 | 382..480 | 163 | 65.7 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6720..6859 | 403..542 | 159 | 58.9 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6789..6918 | 397..526 | 154 | 59.5 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2304..2390 | 376..461 | 144 | 64.4 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6810..6889 | 382..461 | 139 | 63.7 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6756..6903 | 397..544 | 136 | 56.4 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6777..6901 | 397..524 | 128 | 57.8 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2809..2861 | 403..455 | 112 | 67.9 | Plus |
FMO13123.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2013-02-11 10:57:04 Download gff for
FMO13123.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| mof-RA | 98..1230 | 6..1127 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:03:21 Download gff for
FMO13123.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| mof-RA | 100..1232 | 6..1127 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:23:43 Download gff for
FMO13123.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| mof-RA | 100..1232 | 6..1127 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 19:23:43 Download gff for
FMO13123.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 5875639..5876754 | 6..1111 | 98 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:03:21 Download gff for
FMO13123.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 5769672..5770787 | 6..1111 | 98 | | Minus |
