FMO13124.5prime Sequence
1092 bp (1078 high quality bases) assembled on 2013-02-11
> FMO13124.5prime
CAGTCGACATGGCAAGCAGTGTTAGCAATTTGGCCAGCACAGTGGCCACT
GCCACGACTGCTACCTTGGAGGACCTCCACTTCAGCCTCACGGACTACAT
AGTCTTCTCCCTGATGCTGAGCGCCTCGGCAGGAATTGGAGTTTACTTCG
GCTTCTTCTCGAAGGCCAAGAACACCACTGAAGAGTACCTGCAGGGTGGA
AAAAGGATGCCAACCCTTCCTGTAGCCATTTCCCTTGTCTCGAGCCAGCT
GTCTGGAGTGGCCATGATGTCCGTTCCGGCGGAGACTTACTCCTTTGGAT
TCAATATGATCTTCGTGGTGTGGGCCATGGTCTTGTCTGTGCCCGTTCTT
ATATATATCATTGTGCCCGTTTTCTACGATAATAATGTCTCCAATTGCTA
CGAGTATCTTGAGTTGCGATTTAGCAAGCGCACACGACAATTGGTGACCA
TCACCTTTATCCTCAACCAATTTCTGATGCTTCCCGTGTACATGTTTGTG
CCCTCGCTGGCCTTTTCTCAAGTTACTGGATACAACATTCATCTGATTAA
CACGGTGGTCTCGTCCATCTGCGTTTTCTACACGATGCTTGGCGGGATCA
AGGCGGTTGTCTGGACAGATGTGGTCCAGGGAAGCGTTATGTTGATCTCA
GTTGTTCTAGTGGCCATTTTGGGTACCTCGAACACAGGAGGCATAACCAA
TGTCTTGGAAAACGCCGCTGAGGGGGGCCGTTTTGACTTTAGTTTTGGCA
TCGATCCCCGCCTGCGCCTCACCTTCATCAGTGGAATGGCCAGCGGCCTT
CTGATGTGGACAGGTAAGCTTGGCCTTGACCAGAGCTGCGTCCAGAGGAT
TGTGTCTTTGCCCTCGTATGGCCACGCCAAGAGTGTCTGCTTATGGCTGG
CGTTGGCTTCCTACTCATCATGTCCTTTACCTGCTTCACGGAATCATCAT
GTTTGCCTACTACTACGGATGCGATCCCATTCAGGCTGGACTGGTCAGCA
AGCCAGAAAAGTTGATGCCGTTCTTCATCAAGGATATAATGGGTCACATG
AATGGGCATGCCCGGCGTCTTCATTCTCCTTGCGTTTTCAAT
FMO13124.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 18:38:46
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| salt-RC | 2111 | CG2196-RC | 88..1168 | 9..1090 | 5265 | 99.4 | Plus |
| salt-RB | 2114 | CG2196-RB | 88..1168 | 9..1090 | 5265 | 99.4 | Plus |
| CG2187-RB | 2021 | CG2187-RB | 147..691 | 87..631 | 595 | 75.3 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 18:38:44
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 31752990..31753245 | 990..737 | 1180 | 99.2 | Minus |
| 3R | 32079331 | 3R | 31754383..31754618 | 244..9 | 1180 | 100 | Minus |
| 3R | 32079331 | 3R | 31753304..31753525 | 742..521 | 1110 | 100 | Minus |
| 3R | 32079331 | 3R | 31753850..31754011 | 404..243 | 810 | 100 | Minus |
| 3R | 32079331 | 3R | 31753592..31753711 | 522..403 | 600 | 100 | Minus |
| 3R | 32079331 | 3R | 31752848..31752930 | 1074..991 | 340 | 96.4 | Minus |
| 3R | 32079331 | 3R | 31757802..31757932 | 217..87 | 220 | 77.9 | Minus |
| 3R | 32079331 | 3R | 31756946..31757021 | 631..556 | 215 | 85.5 | Minus |
| 3R | 32079331 | 3R | 31761200..31761394 | 283..89 | 195 | 73.3 | Minus |
Blast to na_te.dros performed on 2014-11-28 18:38:45 has no hits.
FMO13124.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2013-02-11 10:57:05 Download gff for
FMO13124.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| salt-RB | 71..1156 | 2..1092 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:03:24 Download gff for
FMO13124.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| salt-RB | 85..1170 | 2..1092 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:23:47 Download gff for
FMO13124.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| salt-RB | 85..1170 | 2..1092 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 19:23:47 Download gff for
FMO13124.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 31752832..31752930 | 991..1092 | 94 | <- | Minus |
| 3R | 31752990..31753239 | 743..990 | 99 | <- | Minus |
| 3R | 31753304..31753523 | 523..742 | 100 | <- | Minus |
| 3R | 31753592..31753709 | 405..522 | 100 | <- | Minus |
| 3R | 31753850..31754009 | 245..404 | 100 | <- | Minus |
| 3R | 31754383..31754621 | 2..244 | 98 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:03:24 Download gff for
FMO13124.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 27578554..27578652 | 991..1092 | 94 | <- | Minus |
| arm_3R | 27578712..27578961 | 743..990 | 99 | <- | Minus |
| arm_3R | 27579026..27579245 | 523..742 | 100 | <- | Minus |
| arm_3R | 27579314..27579431 | 405..522 | 100 | <- | Minus |
| arm_3R | 27579572..27579731 | 245..404 | 100 | <- | Minus |
| arm_3R | 27580105..27580343 | 2..244 | 98 | | Minus |
