FMO13125.5prime Sequence
1185 bp (1032 high quality bases) assembled on 2013-02-11
> FMO13125.5prime
CAGTCGACATGTCCGCATCTAGATCGCGTAATAAACAATCCAAACTTTGT
GACGATGAGCGGCTCGATATAAGCAGGGACGAGTTCAACCGATTCCAGGA
GGCCTTTGGCAAGGAGGAGTTCCGCAAGCTCTTCTTCGACTACGTGGATG
AGATCCAGGATCCTGAGAACCGCAAGATCTACGAGTCAGAGATCACGCAG
CTGGAGAAGGAGCGTGGCGTGGAGGTGAGGTTCATCCACCCGAAGCCGGG
ATTCGTGATCAAGACCGCTCTAGATGGCGAGCTCAAGTGCTTCATCAACA
TCGCTAGCTGTGAGGAGATCCAGAGGCCCAAAAATGAGGTGGCCACGGAT
CCGTCGAGTGGTAGCCGGGGCCTGAGCTGGTCCATTCCGATGGCCCAGAC
CACGTCGCGCGATGACTTCGATGCGAAAAACAACCACTGCAAGGTGTTCG
ACGTCGTCTTCCATCCCGACGCCCTTCACCTGGCCATGCGGAACAAACAG
TTCCGCCAATGCCTCATCGATACGGCACTGGACGCAATCGAACGCGAGTA
CAAGGTCTCGCTGGATCGCGCCAACCTCAAGTTCCCCAAGCTGGACTACA
AGGGTATTCCCCGTCCCACTGTGATACGCAAGATGGCCGATAATCCCACG
GCCGAGGAGCAGGAGCCACATCCCCTGGCGCACATGTTCCCCACAAAGCC
ACCCGCTCCGGGGAAACAAGAGCCCCGTGTCCTGCCCATGAAAACGAAGC
CCTCTCCGGTGCCGGAGTTCACGGTGCCCAGGTATACGATCAAGCACAGC
CACGACGTGGACTTGTCCGAGTACACGGACGAGCTGGATGCCAAGCTGCA
CGTGACCGTTCCTCGTTCTCTTGTCGTGGAGATCGAGCTCCCCTGCTCCG
CTCGACAGCCGAGTGCCAGCTGGACGTCACCTCCAAGTCCATATACCTGT
TCAGCGAGCGACAGGGCGCCAAGTACGCTGAAGCTGGAACTGCCCTTCAT
CGTGGACGACAAGGCGGACCGGGTCCGCTTTGACACGGATATGCGTCGTT
TGAGCATTCCGTTTACTTGTGTGATCCGGAAGAGCATCTAGGAGCCAGGC
CAGAATGTACGAAACCTGGGCCACATTTCGACCCGTAGAAAGCGCTGTGG
ACTGACTCATAGCGAATCCGGGGAGAGATCCGAAT
FMO13125.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 18:39:41
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Nop17l-RA | 3525 | CG1553-RA | 363..1470 | 9..1117 | 5205 | 98.3 | Plus |
| Nop17l-RB | 3510 | CG1553-RB | 348..1455 | 9..1117 | 5205 | 98.3 | Plus |
| Nop17l-RC | 3831 | CG1553-RC | 669..1776 | 9..1117 | 5205 | 98.3 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 18:39:39
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 7803641..7804736 | 1104..9 | 5090 | 98.2 | Minus |
Blast to na_te.dros performed on 2014-11-28 18:39:40 has no hits.
FMO13125.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2013-02-11 10:57:14 Download gff for
FMO13125.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG1553-RC | 665..1776 | 2..1117 | 97 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:04:00 Download gff for
FMO13125.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Nop17l-RC | 665..1776 | 2..1117 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:24:18 Download gff for
FMO13125.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Nop17l-RC | 665..1776 | 2..1117 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 19:24:18 Download gff for
FMO13125.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 7803629..7804740 | 2..1117 | 97 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:04:00 Download gff for
FMO13125.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 3691134..3692245 | 2..1117 | 97 | | Minus |
