FMO13126.5prime Sequence
958 bp (957 high quality bases) assembled on 2013-02-11
> FMO13126.5prime
CAGTCGACATGTTGTTCGCCGGATTTGGAGTACTATTGTTTGTAGCTGTT
GCTGTCGGAGATTCCTTGGATGTGTGCCTGGAGGATATGGGCTGTATGCG
AGGCACTCTAATGCCAGGATATCAGAGCGGAGAGTTCGAAGCCTTCATGG
GCATTCCCTTTGCCCAGCCGCCAGTTGGACCGCTGCGTCTAAAGAACCCT
GTGCCGAATGAACCCTGGGAGGGAGTACTCGATGCTGGAGCGGCGAAGGA
CAGCTGCATTCAGAGAAGTTACTTTGCAAAAGAATGGGGTTTGATGGGAG
TGGAGGACTGCCTCTACCTGAACGTCTACAGACCGAAGAATCGCGCTGAA
GATAAGTTGCCCGTGATGGTTTATATACATGGAGGCGGTTTCTTTAGCGG
ATCTGCCCATCCGATGGCTAGTGGACCAGAGTATCTGATGGATACAAACA
AGGTGGTCATGGTAACAATGAACTATCGCCTTGGTCCCTTCGGTTTTCTA
AGCACTGGCGATGAGCACATGCCAGGGAATTTCGGTTTCAAGGATCAGCG
ATTGGCTCTGCAGTGGATACAAAAACACATAGCTACATTCGGAGGAGATC
CAAAAAAGGTCACGGTCCTTGGGCACAGTGCTGGCGGAATATCTGCCCAC
TTGCACATGATTAGCCCCAATTCAAAGGGACTTTTCCAAAATTCCATGTC
CTTGACTGGCACCATGTTTCTGTCGGCCATGAAGATTCTCAAAGATCCCC
TAAGTCAGGCAAGGCGTCTGGGCAAGGAATTGGCCATCGATCAAGCGGAG
AGTCTCAGTTCCCAGGATCTTTGCGGAAGCCGCTACGTAATGTGTGTCCT
AAAAACTCCTTGTTAGTGTGGACAGCTTAAAGGTGTGGGATAACATGCCC
CATCTACCACTCTCCAGTACTGGAGGCTCCATCTCCCGAAGCCTTCCTGG
TCAAGGAT
FMO13126.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 18:39:46
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Jhedup-RA | 1758 | CG8424-RA | 3..953 | 9..958 | 4610 | 99.3 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 18:39:45
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 16118011..16118292 | 678..958 | 1140 | 97.5 | Plus |
| 2R | 25286936 | 2R | 16117768..16117955 | 492..679 | 940 | 100 | Plus |
| 2R | 25286936 | 2R | 16117111..16117296 | 9..194 | 930 | 100 | Plus |
| 2R | 25286936 | 2R | 16117553..16117710 | 337..494 | 790 | 100 | Plus |
| 2R | 25286936 | 2R | 16117353..16117498 | 193..338 | 730 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 18:39:45 has no hits.
FMO13126.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2013-02-11 10:57:15 Download gff for
FMO13126.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Jhedup-RA | 1..951 | 9..958 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:04:03 Download gff for
FMO13126.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Jhedup-RA | 1..953 | 7..958 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:24:21 Download gff for
FMO13126.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Jhedup-RA | 1..953 | 7..958 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 19:24:21 Download gff for
FMO13126.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 16117104..16117296 | 1..194 | 97 | -> | Plus |
| 2R | 16117355..16117498 | 195..338 | 100 | -> | Plus |
| 2R | 16117555..16117708 | 339..492 | 100 | -> | Plus |
| 2R | 16117769..16117954 | 493..678 | 100 | -> | Plus |
| 2R | 16118012..16118292 | 679..958 | 97 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:04:03 Download gff for
FMO13126.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 12005274..12005459 | 493..678 | 100 | -> | Plus |
| arm_2R | 12004860..12005003 | 195..338 | 100 | -> | Plus |
| arm_2R | 12005060..12005213 | 339..492 | 100 | -> | Plus |
| arm_2R | 12004609..12004801 | 1..194 | 97 | -> | Plus |
| arm_2R | 12005517..12005797 | 679..958 | 97 | | Plus |
